1ykw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 23 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ykw.png|left|200px]]
 
-
<!--
+
==Crystal Structure of a Novel RuBisCO-Like Protein from the Green Sulfur Bacterium Chlorobium tepidum==
-
The line below this paragraph, containing "STRUCTURE_1ykw", creates the "Structure Box" on the page.
+
<StructureSection load='1ykw' size='340' side='right'caption='[[1ykw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ykw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YKW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ykw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ykw OCA], [https://pdbe.org/1ykw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ykw RCSB], [https://www.ebi.ac.uk/pdbsum/1ykw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ykw ProSAT]</span></td></tr>
-
{{STRUCTURE_1ykw| PDB=1ykw | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RBLL_CHLTE RBLL_CHLTE] May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity.<ref>PMID:11287671</ref> <ref>PMID:15893668</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yk/1ykw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ykw ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) catalyzes the incorporation of atmospheric CO(2) into ribulose 1,5-bisphosphate (RuBP). RuBisCOs are classified into four forms based on sequence similarity: forms I, II and III are bona fide RuBisCOs; form IV, also called the RuBisCO-like protein (RLP), lacks several of the substrate binding and catalytic residues and does not catalyze RuBP-dependent CO(2) fixation in vitro. To contribute to understanding the function of RLPs, we determined the crystal structure of the RLP from Chlorobium tepidum. The overall structure of the RLP is similar to the structures of the three other forms of RuBisCO; however, the active site is distinct from those of bona fide RuBisCOs and suggests that the RLP is possibly capable of catalyzing enolization but not carboxylation. Bioinformatic analysis of the protein functional linkages suggests that this RLP coevolved with enzymes of the bacteriochlorophyll biosynthesis pathway and may be involved in processes related to photosynthesis.
-
===Crystal Structure of a Novel RuBisCO-Like Protein from the Green Sulfur Bacterium Chlorobium tepidum===
+
Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum.,Li H, Sawaya MR, Tabita FR, Eisenberg D Structure. 2005 May;13(5):779-89. PMID:15893668<ref>PMID:15893668</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15893668}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1ykw" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15893668 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_15893668}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
1YKW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YKW OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum., Li H, Sawaya MR, Tabita FR, Eisenberg D, Structure. 2005 May;13(5):779-89. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15893668 15893668]
+
[[Category: Chlorobaculum tepidum]]
[[Category: Chlorobaculum tepidum]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Eisenberg, D.]]
+
[[Category: Eisenberg D]]
-
[[Category: Li, H.]]
+
[[Category: Li H]]
-
[[Category: Sawaya, M R.]]
+
[[Category: Sawaya MR]]
-
[[Category: Tabita, F R.]]
+
[[Category: Tabita FR]]
-
[[Category: Beta-alpha-barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 13:04:40 2008''
+

Current revision

Crystal Structure of a Novel RuBisCO-Like Protein from the Green Sulfur Bacterium Chlorobium tepidum

PDB ID 1ykw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ykw"
Personal tools