This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2c7j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:38, 1 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2c7j.png|left|200px]]
 
-
<!--
+
==Phycoerythrocyanin from Mastigocladus laminosus, 295 K, 3.0 A==
-
The line below this paragraph, containing "STRUCTURE_2c7j", creates the "Structure Box" on the page.
+
<StructureSection load='2c7j' size='340' side='right'caption='[[2c7j]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2c7j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mastigocladus_laminosus Mastigocladus laminosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C7J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C7J FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
-
{{STRUCTURE_2c7j| PDB=2c7j | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c7j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c7j OCA], [https://pdbe.org/2c7j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c7j RCSB], [https://www.ebi.ac.uk/pdbsum/2c7j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c7j ProSAT]</span></td></tr>
-
 
+
</table>
-
===PHYCOERYTHROCYANIN FROM MASTIGOCLADUS LAMINOSUS, 295 K, 3.0 A===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PHEA_MASLA PHEA_MASLA] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16377266}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16377266 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/2c7j_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16377266}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2C7J is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mastigocladus_laminosus Mastigocladus laminosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C7J OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2c7j ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Local protein flexibility as a prerequisite for reversible chromophore isomerization in alpha-phycoerythrocyanin., Schmidt M, Krasselt A, Reuter W, Biochim Biophys Acta. 2006 Jan;1764(1):55-62. Epub 2005 Nov 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16377266 16377266]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mastigocladus laminosus]]
[[Category: Mastigocladus laminosus]]
-
[[Category: Protein complex]]
+
[[Category: Krasselt A]]
-
[[Category: Krasselt, A.]]
+
[[Category: Reuter W]]
-
[[Category: Reuter, W.]]
+
[[Category: Schmidt M]]
-
[[Category: Schmidt, M.]]
+
-
[[Category: Bile pigment]]
+
-
[[Category: Chromophore]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Photosynthesis]]
+
-
[[Category: Phycobilisome]]
+
-
[[Category: Phycocyanobilin]]
+
-
[[Category: Phycoerythrocyanin]]
+
-
[[Category: Phycoviolobilin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 13:14:47 2008''
+

Current revision

Phycoerythrocyanin from Mastigocladus laminosus, 295 K, 3.0 A

PDB ID 2c7j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools