This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2atg
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:2atg.png|left|200px]] | ||
| - | < | + | ==NMR structure of Retrocyclin-2 in SDS== |
| - | + | <StructureSection load='2atg' size='340' side='right'caption='[[2atg]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2atg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ATG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ATG FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |
| - | -- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2atg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2atg OCA], [https://pdbe.org/2atg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2atg RCSB], [https://www.ebi.ac.uk/pdbsum/2atg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2atg ProSAT]</span></td></tr> |
| - | + | </table> | |
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Retrocyclins are circular mini-defensins with significant potential as agents against human immunodeficiency virus, influenza A, and herpes simplex virus. Retrocyclins bind carbohydrate-containing surface molecules such as gp120 and CD4 with high affinity (Kd, 10-100 nM), promoting their localization on cell membranes. The structural features important for activity have yet to be fully elucidated, but here, we have determined the first three-dimensional structure of a retrocyclin, namely, one of the most potent forms, retrocyclin-2. In the presence of SDS micelles, a well-defined beta-hairpin braced by three disulfide bonds that defines the cystine ladder motif is present. By contrast, a well-defined structure could not be determined in aqueous solution, suggesting that the presence of SDS micelles stabilizes the extended conformation of retrocyclin-2. Translational diffusion measurements indicate that retrocyclin-2 interacts with the SDS micelles, and such a membrane-like interaction may be an important feature in the mechanism of action of these antimicrobial peptides. Analytical ultracentrifugation and the NMR data indicated that retrocyclin-2 self-associates to form a trimer in a concentration-dependent manner. The ability to self-associate may contribute to the high-affinity binding of retrocyclins for glycoproteins by increasing the valency and enhancing the ability of retrocyclins to cross-link cell surface glycoproteins. | ||
| - | + | Retrocyclin-2: structural analysis of a potent anti-HIV theta-defensin.,Daly NL, Chen YK, Rosengren KJ, Marx UC, Phillips ML, Waring AJ, Wang W, Lehrer RI, Craik DJ Biochemistry. 2007 Sep 4;46(35):9920-8. Epub 2007 Aug 8. PMID:17685559<ref>PMID:17685559</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 2atg" style="background-color:#fffaf0;"></div> | |
| - | + | == References == | |
| - | --> | + | <references/> |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | == | + | [[Category: Homo sapiens]] |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Chen YK]] | |
| - | + | [[Category: Craik DJ]] | |
| - | + | [[Category: Daly NL]] | |
| - | [[Category: | + | [[Category: Lehrer RI]] |
| - | [[Category: Chen | + | [[Category: Marx UC]] |
| - | [[Category: Craik | + | [[Category: Phillips ML]] |
| - | [[Category: Daly | + | [[Category: Rosengren KJ]] |
| - | [[Category: Lehrer | + | [[Category: Wang W]] |
| - | [[Category: Marx | + | [[Category: Waring AJ]] |
| - | [[Category: Phillips | + | |
| - | [[Category: Rosengren | + | |
| - | [[Category: Wang | + | |
| - | [[Category: Waring | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
NMR structure of Retrocyclin-2 in SDS
| |||||||||||
Categories: Homo sapiens | Large Structures | Chen YK | Craik DJ | Daly NL | Lehrer RI | Marx UC | Phillips ML | Rosengren KJ | Wang W | Waring AJ
