1pjb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:08, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1pjb.png|left|200px]]
 
-
<!--
+
==L-ALANINE DEHYDROGENASE==
-
The line below this paragraph, containing "STRUCTURE_1pjb", creates the "Structure Box" on the page.
+
<StructureSection load='1pjb' size='340' side='right'caption='[[1pjb]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1pjb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PJB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pjb OCA], [https://pdbe.org/1pjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pjb RCSB], [https://www.ebi.ac.uk/pdbsum/1pjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pjb ProSAT]</span></td></tr>
-
{{STRUCTURE_1pjb| PDB=1pjb | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===L-ALANINE DEHYDROGENASE===
+
[https://www.uniprot.org/uniprot/O52942_PHOLP O52942_PHOLP]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9665169}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9665169 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pj/1pjb_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_9665169}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pjb ConSurf].
-
1PJB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PJB OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase., Baker PJ, Sawa Y, Shibata H, Sedelnikova SE, Rice DW, Nat Struct Biol. 1998 Jul;5(7):561-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9665169 9665169]
+
[[Category: Large Structures]]
-
[[Category: Alanine dehydrogenase]]
+
[[Category: Phormidium lapideum]]
[[Category: Phormidium lapideum]]
-
[[Category: Single protein]]
+
[[Category: Baker PJ]]
-
[[Category: Baker, P J.]]
+
[[Category: Rice DW]]
-
[[Category: Rice, D W.]]
+
[[Category: Sawa Y]]
-
[[Category: Sawa, Y.]]
+
[[Category: Sedelnikova SE]]
-
[[Category: Sedelnikova, S E.]]
+
[[Category: Shibata H]]
-
[[Category: Shibata, H.]]
+
-
[[Category: Nad]]
+
-
[[Category: Oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 14:29:03 2008''
+

Current revision

L-ALANINE DEHYDROGENASE

PDB ID 1pjb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools