1k6l

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(New page: 200px<br /><applet load="1k6l" size="450" color="white" frame="true" align="right" spinBox="true" caption="1k6l, resolution 3.10&Aring;" /> '''Photosynethetic Reac...)
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[[Image:1k6l.gif|left|200px]]<br /><applet load="1k6l" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1k6l, resolution 3.10&Aring;" />
 
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'''Photosynethetic Reaction Center from Rhodobacter sphaeroides'''<br />
 
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==Overview==
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==Photosynethetic Reaction Center from Rhodobacter sphaeroides==
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We report on the unexpected structural changes caused by substitution of, acidic amino acids in the Q(B) binding pocket of the bacterial, photosynthetic reaction center by alanines. The mutations targeted key, residues L212Glu and L213Asp of this transmembrane protein-cofactor, complex. The amino acid substitutions in the L212Ala-L213Ala mutant, reaction center ("AA") were known to affect the delivery of protons after, the light-induced generation of Q(B)(-), which renders the AA strain, incapable of photosynthetic growth. The AA structure not only revealed, side chain rearrangements but also showed movement of the main chain, segments that are contiguous with the mutation sites. The alanine, substitutions caused an expansion of the cavity rather than its collapse., In addition, Q(B) is found mainly in the binding site that is proximal to, the iron-ligand complex (closest to Q(A)) as opposed to its distal binding, site (furthest from Q(A)) in the structure of the wild-type reaction, center. The observed rearrangements in the structure of the AA reaction, center establish a new balance between charged residues of an interactive, network near Q(B). This structurally and electrostatically altered complex, forms the basis for future understanding of the structural basis for, proton transfer in active reaction centers which retain the alanine, substitutions but carry a distant compensatory mutation.
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<StructureSection load='1k6l' size='340' side='right'caption='[[1k6l]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1k6l]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K6L FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=SPN:SPEROIDENONE'>SPN</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k6l OCA], [https://pdbe.org/1k6l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k6l RCSB], [https://www.ebi.ac.uk/pdbsum/1k6l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k6l ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k6l_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k6l ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report on the unexpected structural changes caused by substitution of acidic amino acids in the Q(B) binding pocket of the bacterial photosynthetic reaction center by alanines. The mutations targeted key residues L212Glu and L213Asp of this transmembrane protein-cofactor complex. The amino acid substitutions in the L212Ala-L213Ala mutant reaction center ("AA") were known to affect the delivery of protons after the light-induced generation of Q(B)(-), which renders the AA strain incapable of photosynthetic growth. The AA structure not only revealed side chain rearrangements but also showed movement of the main chain segments that are contiguous with the mutation sites. The alanine substitutions caused an expansion of the cavity rather than its collapse. In addition, Q(B) is found mainly in the binding site that is proximal to the iron-ligand complex (closest to Q(A)) as opposed to its distal binding site (furthest from Q(A)) in the structure of the wild-type reaction center. The observed rearrangements in the structure of the AA reaction center establish a new balance between charged residues of an interactive network near Q(B). This structurally and electrostatically altered complex forms the basis for future understanding of the structural basis for proton transfer in active reaction centers which retain the alanine substitutions but carry a distant compensatory mutation.
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==About this Structure==
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The structure of a mutant photosynthetic reaction center shows unexpected changes in main chain orientations and quinone position.,Pokkuluri PR, Laible PD, Deng YL, Wong TN, Hanson DK, Schiffer M Biochemistry. 2002 May 14;41(19):5998-6007. PMID:11993994<ref>PMID:11993994</ref>
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1K6L is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides] with FE, BCL, BPH, U10, SPN, CDL and LDA as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1K6L OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The structure of a mutant photosynthetic reaction center shows unexpected changes in main chain orientations and quinone position., Pokkuluri PR, Laible PD, Deng YL, Wong TN, Hanson DK, Schiffer M, Biochemistry. 2002 May 14;41(19):5998-6007. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11993994 11993994]
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</div>
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[[Category: Protein complex]]
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<div class="pdbe-citations 1k6l" style="background-color:#fffaf0;"></div>
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[[Category: Rhodobacter sphaeroides]]
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== References ==
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[[Category: Deng, Y.L.]]
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<references/>
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[[Category: Hanson, D.K.]]
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__TOC__
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[[Category: Laible, P.D.]]
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</StructureSection>
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[[Category: Pokkuluri, P.R.]]
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[[Category: Cereibacter sphaeroides]]
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[[Category: Schiffer, M.]]
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[[Category: Large Structures]]
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[[Category: Wong, T.N.]]
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[[Category: Deng Y-L]]
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[[Category: BCL]]
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[[Category: Hanson DK]]
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[[Category: BPH]]
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[[Category: Laible PD]]
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[[Category: CDL]]
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[[Category: Pokkuluri PR]]
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[[Category: FE]]
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[[Category: Schiffer M]]
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[[Category: LDA]]
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[[Category: Wong TN]]
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[[Category: SPN]]
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[[Category: U10]]
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[[Category: membrane protein]]
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[[Category: photosynthetic reaction center]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 18:53:28 2007''
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Current revision

Photosynethetic Reaction Center from Rhodobacter sphaeroides

PDB ID 1k6l

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