This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1n61

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:27, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1n61.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Dithionite reduced state==
-
The line below this paragraph, containing "STRUCTURE_1n61", creates the "Structure Box" on the page.
+
<StructureSection load='1n61' size='340' side='right'caption='[[1n61]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1n61]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Afipia_carboxidovorans_OM5 Afipia carboxidovorans OM5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N61 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N61 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CUN:CU(I)-S-MO(IV)(=O)OH+CLUSTER'>CUN</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1n61| PDB=1n61 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n61 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n61 OCA], [https://pdbe.org/1n61 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n61 RCSB], [https://www.ebi.ac.uk/pdbsum/1n61 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n61 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCMS_AFIC5 DCMS_AFIC5] Catalyzes the oxidation of carbon monoxide to carbon dioxide.<ref>PMID:12475995</ref> <ref>PMID:21275368</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n6/1n61_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n61 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Dithionite reduced state===
+
==See Also==
-
 
+
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12475995}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 12475995 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Afipia carboxidovorans OM5]]
-
{{ABSTRACT_PUBMED_12475995}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Dobbek H]]
-
==About this Structure==
+
[[Category: Gremer L]]
-
1N61 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Oligotropha_carboxidovorans Oligotropha carboxidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N61 OCA].
+
[[Category: Huber R]]
-
 
+
[[Category: Kiefersauer R]]
-
==Reference==
+
[[Category: Meyer O]]
-
Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution., Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O, Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15971-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12475995 12475995]
+
-
[[Category: Oligotropha carboxidovorans]]
+
-
[[Category: Protein complex]]
+
-
[[Category: Dobbek, H.]]
+
-
[[Category: Gremer, L.]]
+
-
[[Category: Huber, R.]]
+
-
[[Category: Kiefersauer, R.]]
+
-
[[Category: Meyer, O.]]
+
-
[[Category: Codh]]
+
-
[[Category: Copper]]
+
-
[[Category: Molybdenum]]
+
-
[[Category: Molybdopterin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 16:09:47 2008''
+

Current revision

Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Dithionite reduced state

PDB ID 1n61

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools