2aa3

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{{Seed}}
 
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[[Image:2aa3.png|left|200px]]
 
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==Crystal structure of Plasmodium vivax lactate dehydrogenase complex with APADH==
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The line below this paragraph, containing "STRUCTURE_2aa3", creates the "Structure Box" on the page.
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<StructureSection load='2aa3' size='340' side='right'caption='[[2aa3]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2aa3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AA3 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AP0:ACETYL+PYRIDINE+ADENINE+DINUCLEOTIDE,+REDUCED'>AP0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2aa3| PDB=2aa3 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2aa3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aa3 OCA], [https://pdbe.org/2aa3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2aa3 RCSB], [https://www.ebi.ac.uk/pdbsum/2aa3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2aa3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q4PRK9_PLAVI Q4PRK9_PLAVI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/2aa3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2aa3 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Malaria caused by Plasmodium vivax is a major cause of global morbidity and, in rare cases, mortality. Lactate dehydrogenase is an essential Plasmodium protein and, therefore, a potential antimalarial drug target. Ideally, drugs directed against this target would be effective against both major species of Plasmodium, P. falciparum and P. vivax. In this study, the crystal structure of the lactate dehydrogenase protein from P. vivax has been solved and is compared to the equivalent structure from the P. falciparum enzyme. The active sites and cofactor binding pockets of both enzymes are found to be highly similar and differentiate these enzymes from their human counterparts. These structures suggest effective inhibition of both enzymes should be readily achievable with a common inhibitor. The crystal structures of both enzymes have also been solved in complex with the synthetic cofactor APADH. The unusual cofactor binding site in these Plasmodium enzymes is found to readily accommodate both NADH and APADH, explaining why the Plasmodium enzymes retain enzymatic activity in the presence of this synthetic cofactor.
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===Crystal structure of Plasmodium vivax lactate dehydrogenase complex with APADH===
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Structure of lactate dehydrogenase from Plasmodium vivax: complexes with NADH and APADH.,Chaikuad A, Fairweather V, Conners R, Joseph-Horne T, Turgut-Balik D, Brady RL Biochemistry. 2005 Dec 13;44(49):16221-8. PMID:16331982<ref>PMID:16331982</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2aa3" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_16331982}}, adds the Publication Abstract to the page
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*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 16331982 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16331982}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2AA3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AA3 OCA].
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==Reference==
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Structure of lactate dehydrogenase from Plasmodium vivax: complexes with NADH and APADH., Chaikuad A, Fairweather V, Conners R, Joseph-Horne T, Turgut-Balik D, Brady RL, Biochemistry. 2005 Dec 13;44(49):16221-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16331982 16331982]
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[[Category: L-lactate dehydrogenase]]
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[[Category: Plasmodium vivax]]
[[Category: Plasmodium vivax]]
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[[Category: Single protein]]
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[[Category: Brady RL]]
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[[Category: Brady, R L.]]
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[[Category: Chaikuad A]]
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[[Category: Chaikuad, A.]]
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[[Category: Conners R]]
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[[Category: Conners, R.]]
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[[Category: Fairweather V]]
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[[Category: Fairweather, V.]]
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[[Category: Joseph-Horne T]]
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[[Category: Joseph-Horne, T.]]
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[[Category: Turgut-Balik D]]
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[[Category: Turgut-Balik, D.]]
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[[Category: Rossmann fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 16:54:12 2008''
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Current revision

Crystal structure of Plasmodium vivax lactate dehydrogenase complex with APADH

PDB ID 2aa3

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