This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yyp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:01, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1yyp.png|left|200px]]
 
-
<!--
+
==Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54==
-
The line below this paragraph, containing "STRUCTURE_1yyp", creates the "Structure Box" on the page.
+
<StructureSection load='1yyp' size='340' side='right'caption='[[1yyp]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1yyp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_betaherpesvirus_5 Human betaherpesvirus 5] and [https://en.wikipedia.org/wiki/Human_herpesvirus_5_strain_AD169 Human herpesvirus 5 strain AD169]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YYP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1yyp| PDB=1yyp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yyp OCA], [https://pdbe.org/1yyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yyp RCSB], [https://www.ebi.ac.uk/pdbsum/1yyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yyp ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/VPAP_HCMVA VPAP_HCMVA] Accessory subunit of the DNA polymerase that acts to increase the processivity of polymerization.<ref>PMID:20538862</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16371349}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16371349 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/1yyp_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16371349}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1YYP is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Human_herpesvirus_5 Human herpesvirus 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYP OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yyp ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
Crystal structure of the cytomegalovirus DNA polymerase subunit UL44 in complex with the C terminus from the catalytic subunit. Differences in structure and function relative to unliganded UL44., Appleton BA, Brooks J, Loregian A, Filman DJ, Coen DM, Hogle JM, J Biol Chem. 2006 Feb 24;281(8):5224-32. Epub 2005 Dec 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16371349 16371349]
+
<references/>
-
[[Category: DNA-directed DNA polymerase]]
+
__TOC__
-
[[Category: Human herpesvirus 5]]
+
</StructureSection>
-
[[Category: Protein complex]]
+
[[Category: Human betaherpesvirus 5]]
-
[[Category: Appleton, B A.]]
+
[[Category: Human herpesvirus 5 strain AD169]]
-
[[Category: Brooks, J.]]
+
[[Category: Large Structures]]
-
[[Category: Coen, D M.]]
+
[[Category: Appleton BA]]
-
[[Category: Filman, D J.]]
+
[[Category: Brooks J]]
-
[[Category: Hogle, J M.]]
+
[[Category: Coen DM]]
-
[[Category: Loregian, A]]
+
[[Category: Filman DJ]]
-
[[Category: Pcna]]
+
[[Category: Hogle JM]]
-
 
+
[[Category: Loregian A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 17:08:29 2008''
+

Current revision

Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54

PDB ID 1yyp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yyp"
Personal tools