1kkm

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(New page: 200px<br /><applet load="1kkm" size="450" color="white" frame="true" align="right" spinBox="true" caption="1kkm, resolution 2.80&Aring;" /> '''L.casei HprK/P in co...)
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[[Image:1kkm.gif|left|200px]]<br /><applet load="1kkm" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1kkm, resolution 2.80&Aring;" />
 
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'''L.casei HprK/P in complex with B.subtilis P-Ser-HPr'''<br />
 
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==Overview==
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==L.casei HprK/P in complex with B.subtilis P-Ser-HPr==
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HPr kinase/phosphorylase (HprK/P) controls the phosphorylation state of, the phosphocarrier protein HPr and regulates the utilization of carbon, sources by Gram-positive bacteria. It catalyzes both the ATP-dependent, phosphorylation of Ser-46 of HPr and its dephosphorylation by, phosphorolysis. The latter reaction uses inorganic phosphate as substrate, and produces pyrophosphate. We present here two crystal structures of a, complex of the catalytic domain of Lactobacillus casei HprK/P with, Bacillus subtilis HPr, both at 2.8-A resolution. One of the structures was, obtained in the presence of excess pyrophosphate, reversing the, phosphorolysis reaction and contains serine-phosphorylated HPr. The, complex has six HPr molecules bound to the hexameric kinase. Two adjacent, enzyme subunits are in contact with each HPr molecule, one through its, active site and the other through its C-terminal helix. In the complex, with serine-phosphorylated HPr, a phosphate ion is in a position to, perform a nucleophilic attack on the phosphoserine. Although the mechanism, of the phosphorylation reaction resembles that of eukaryotic protein, kinases, the dephosphorylation by inorganic phosphate is unique to the, HprK/P family of kinases. This study provides the structure of a protein, kinase in complex with its protein substrate, giving insights into the, chemistry of the phospho-transfer reactions in both directions.
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<StructureSection load='1kkm' size='340' side='right'caption='[[1kkm]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1kkm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Lacticaseibacillus_casei Lacticaseibacillus casei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KKM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kkm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kkm OCA], [https://pdbe.org/1kkm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kkm RCSB], [https://www.ebi.ac.uk/pdbsum/1kkm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kkm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HPRK_LACCA HPRK_LACCA] Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of 'Ser-46' in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK/P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport: it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion.[HAMAP-Rule:MF_01249]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kkm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kkm ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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HPr kinase/phosphorylase (HprK/P) controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by Gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. We present here two crystal structures of a complex of the catalytic domain of Lactobacillus casei HprK/P with Bacillus subtilis HPr, both at 2.8-A resolution. One of the structures was obtained in the presence of excess pyrophosphate, reversing the phosphorolysis reaction and contains serine-phosphorylated HPr. The complex has six HPr molecules bound to the hexameric kinase. Two adjacent enzyme subunits are in contact with each HPr molecule, one through its active site and the other through its C-terminal helix. In the complex with serine-phosphorylated HPr, a phosphate ion is in a position to perform a nucleophilic attack on the phosphoserine. Although the mechanism of the phosphorylation reaction resembles that of eukaryotic protein kinases, the dephosphorylation by inorganic phosphate is unique to the HprK/P family of kinases. This study provides the structure of a protein kinase in complex with its protein substrate, giving insights into the chemistry of the phospho-transfer reactions in both directions.
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==About this Structure==
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X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr.,Fieulaine S, Morera S, Poncet S, Mijakovic I, Galinier A, Janin J, Deutscher J, Nessler S Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13437-41. Epub 2002 Oct 1. PMID:12359875<ref>PMID:12359875</ref>
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1KKM is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [http://en.wikipedia.org/wiki/Lactobacillus_casei Lactobacillus casei] with CA and PO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1KKM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr., Fieulaine S, Morera S, Poncet S, Mijakovic I, Galinier A, Janin J, Deutscher J, Nessler S, Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13437-41. Epub 2002 Oct 1. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12359875 12359875]
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</div>
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[[Category: Bacillus subtilis]]
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<div class="pdbe-citations 1kkm" style="background-color:#fffaf0;"></div>
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[[Category: Lactobacillus casei]]
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[[Category: Protein complex]]
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[[Category: Deutscher, J.]]
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[[Category: Fieulaine, S.]]
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[[Category: Galinier, A.]]
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[[Category: Janin, J.]]
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[[Category: Morera, S.]]
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[[Category: Nessler, S.]]
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[[Category: Poncet, S.]]
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[[Category: CA]]
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[[Category: PO4]]
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[[Category: bacteria]]
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[[Category: phosphorylation]]
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[[Category: phosphoserine]]
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[[Category: protein kinase]]
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[[Category: protein/protein interaction]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:19:51 2007''
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==See Also==
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*[[Phosphocarrier protein HPr 3D structures|Phosphocarrier protein HPr 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bacillus subtilis]]
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[[Category: Lacticaseibacillus casei]]
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[[Category: Large Structures]]
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[[Category: Deutscher J]]
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[[Category: Fieulaine S]]
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[[Category: Galinier A]]
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[[Category: Janin J]]
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[[Category: Morera S]]
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[[Category: Nessler S]]
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[[Category: Poncet S]]

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L.casei HprK/P in complex with B.subtilis P-Ser-HPr

PDB ID 1kkm

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