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1yzz

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{{Seed}}
 
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[[Image:1yzz.png|left|200px]]
 
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==Humanized caban33 at room temperature==
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The line below this paragraph, containing "STRUCTURE_1yzz", creates the "Structure Box" on the page.
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<StructureSection load='1yzz' size='340' side='right'caption='[[1yzz]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yzz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZZ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzz OCA], [https://pdbe.org/1yzz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzz RCSB], [https://www.ebi.ac.uk/pdbsum/1yzz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzz ProSAT]</span></td></tr>
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{{STRUCTURE_1yzz| PDB=1yzz | SCENE= }}
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yzz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Heavy chain only antibodies of camelids bind their antigens with a single domain, the VHH, which acquired adaptations relative to classical VHs to function in the absence of a VL partner. Additional CDR loop conformations, outside the canonical loop structures of VHs, broaden the repertoire of the antigen-binding site. The combined effects of part of the CDR3 that folds over the "former" VL binding site and framework-2 mutations to more hydrophilic amino acids, enhance the solubility of VHH domains and prevent VL pairing. cAbAn33, a VHH domain specific for the carbohydrate moiety of the variant surface glycoprotein of trypanosomes, has a short CDR3 loop that does not cover the former VL binding site as well as a VH-specific Trp47 instead of the VHH-specific Gly47. Resurfacing its framework-2 region (mutations Tyr37Val, Glu44Gly and Arg45Leu) to mimic that of a human VH restores the VL binding capacity. In solution, the humanised VHH behaves as a soluble, monomeric entity, albeit with reduced thermodynamic stability and affinity for its antigen. Comparison of the crystal structures of cAbAn33 and its humanised derivative reveals steric hindrance exerted by VHH-specific residues Tyr37 and Arg45 that prevent the VL domain pairing, whereas Glu44 and Arg45 are key elements to avoid insolubility of the domain.
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===Humanized caban33 at room temperature===
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Antigen binding and solubility effects upon the veneering of a camel VHH in framework-2 to mimic a VH.,Conrath K, Vincke C, Stijlemans B, Schymkowitz J, Decanniere K, Wyns L, Muyldermans S, Loris R J Mol Biol. 2005 Jul 1;350(1):112-25. PMID:15913651<ref>PMID:15913651</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15913651}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1yzz" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15913651 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15913651}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1YZZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZZ OCA].
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==Reference==
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Antigen binding and solubility effects upon the veneering of a camel VHH in framework-2 to mimic a VH., Conrath K, Vincke C, Stijlemans B, Schymkowitz J, Decanniere K, Wyns L, Muyldermans S, Loris R, J Mol Biol. 2005 Jul 1;350(1):112-25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15913651 15913651]
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[[Category: Camelus dromedarius]]
[[Category: Camelus dromedarius]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Conrath, K.]]
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[[Category: Conrath K]]
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[[Category: Decanniere, K.]]
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[[Category: Decanniere K]]
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[[Category: Loris, R.]]
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[[Category: Loris R]]
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[[Category: Muyldermans, S.]]
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[[Category: Muyldermans S]]
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[[Category: Schymkowitz, J.]]
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[[Category: Schymkowitz J]]
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[[Category: Stijlemans, B.]]
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[[Category: Stijlemans B]]
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[[Category: Vincke, C.]]
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[[Category: Vincke C]]
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[[Category: Antibody]]
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[[Category: Camel antibody]]
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[[Category: Humanization]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 18:25:52 2008''
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Current revision

Humanized caban33 at room temperature

PDB ID 1yzz

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