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5cyt
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="5cyt" size="450" color="white" frame="true" align="right" spinBox="true" caption="5cyt, resolution 1.5Å" /> '''REFINEMENT OF MYOGLOB...) |
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| - | [[Image:5cyt.jpg|left|200px]]<br /><applet load="5cyt" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="5cyt, resolution 1.5Å" /> | ||
| - | '''REFINEMENT OF MYOGLOBIN AND CYTOCHROME C'''<br /> | ||
| - | == | + | ==REFINEMENT OF MYOGLOBIN AND CYTOCHROME C== |
| - | + | <StructureSection load='5cyt' size='340' side='right'caption='[[5cyt]], [[Resolution|resolution]] 1.50Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Albacore Albacore]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4cyt 4cyt] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2cyt 2cyt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CYT FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr> |
| - | [[ | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [https://pdbe.org/5cyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [https://www.ebi.ac.uk/pdbsum/5cyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyt ProSAT]</span></td></tr> |
| - | [[ | + | </table> |
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/CYC_THUAA CYC_THUAA]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/5cyt_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5cyt ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Cytochrome C 3D structures|Cytochrome C 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Albacore]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Takano, T]] | ||
Current revision
REFINEMENT OF MYOGLOBIN AND CYTOCHROME C
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