This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hbx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2hbx.png|left|200px]]
 
-
<!--
+
==Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)==
-
The line below this paragraph, containing "STRUCTURE_2hbx", creates the "Structure Box" on the page.
+
<StructureSection load='2hbx' size='340' side='right'caption='[[2hbx]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2hbx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HBX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
-
{{STRUCTURE_2hbx| PDB=2hbx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hbx OCA], [https://pdbe.org/2hbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hbx RCSB], [https://www.ebi.ac.uk/pdbsum/2hbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hbx ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehye-Decarboxylase (ACMSD)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q83V25_PSEFL Q83V25_PSEFL]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16939194}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16939194 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hb/2hbx_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16939194}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2HBX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HBX OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hbx ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Crystal structure of alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase: insight into the active site and catalytic mechanism of a novel decarboxylation reaction., Martynowski D, Eyobo Y, Li T, Yang K, Liu A, Zhang H, Biochemistry. 2006 Sep 5;45(35):10412-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16939194 16939194]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas fluorescens]]
[[Category: Pseudomonas fluorescens]]
-
[[Category: Single protein]]
+
[[Category: Eyobo Y]]
-
[[Category: Eyobo, Y.]]
+
[[Category: Li T]]
-
[[Category: Li, T.]]
+
[[Category: Liu A]]
-
[[Category: Liu, A.]]
+
[[Category: Martynowski D]]
-
[[Category: Martynowski, D.]]
+
[[Category: Yang K]]
-
[[Category: Yang, K.]]
+
[[Category: Zhang H]]
-
[[Category: Zhang, H.]]
+
-
[[Category: Acmsd]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Metaloenzyme]]
+
-
[[Category: Tim-barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 19:45:50 2008''
+

Current revision

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

PDB ID 2hbx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2hbx"
Personal tools