This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4gpd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="4gpd" size="450" color="white" frame="true" align="right" spinBox="true" caption="4gpd, resolution 2.8Å" /> '''THE STRUCTURE OF LOBS...) |
|||
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:4gpd.jpg|left|200px]]<br /><applet load="4gpd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="4gpd, resolution 2.8Å" /> | ||
| - | '''THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION'''<br /> | ||
| - | == | + | ==THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION== |
| - | + | <StructureSection load='4gpd' size='340' side='right'caption='[[4gpd]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4gpd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homarus_americanus Homarus americanus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2gpd 2gpd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GPD FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gpd OCA], [https://pdbe.org/4gpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gpd RCSB], [https://www.ebi.ac.uk/pdbsum/4gpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gpd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/G3P_HOMAM G3P_HOMAM] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/4gpd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=4gpd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Aldehyde dehydrogenase 3D structures|Aldehyde dehydrogenase 3D structures]] | |
| - | [[ | + | *[[Glyceraldehyde-3-phosphate dehydrogenase 3D structures|Glyceraldehyde-3-phosphate dehydrogenase 3D structures]] |
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Homarus americanus]] | [[Category: Homarus americanus]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Griffith | + | [[Category: Griffith JP]] |
| - | [[Category: Rossmann | + | [[Category: Rossmann MG]] |
| - | [[Category: Song | + | [[Category: Song S]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION
| |||||||||||
