2ghv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:58, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ghv.png|left|200px]]
 
-
<!--
+
==Crystal structure of SARS spike protein receptor binding domain==
-
The line below this paragraph, containing "STRUCTURE_2ghv", creates the "Structure Box" on the page.
+
<StructureSection load='2ghv' size='340' side='right'caption='[[2ghv]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ghv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome-related_coronavirus Severe acute respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GHV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ghv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ghv OCA], [https://pdbe.org/2ghv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ghv RCSB], [https://www.ebi.ac.uk/pdbsum/2ghv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ghv ProSAT]</span></td></tr>
-
{{STRUCTURE_2ghv| PDB=2ghv | SCENE= }}
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/2ghv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ghv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Severe acute respiratory syndrome (SARS) is a newly emerged infectious disease that caused pandemic spread in 2003. The etiological agent of SARS is a novel coronavirus (SARS-CoV). The coronaviral surface spike protein S is a type I transmembrane glycoprotein that mediates initial host binding via the cell surface receptor angiotensin-converting enzyme 2 (ACE2), as well as the subsequent membrane fusion events required for cell entry. Here we report the crystal structure of the S1 receptor binding domain (RBD) in complex with a neutralizing antibody, 80R, at 2.3 A resolution, as well as the structure of the uncomplexed S1 RBD at 2.2 A resolution. We show that the 80R-binding epitope on the S1 RBD overlaps very closely with the ACE2-binding site, providing a rationale for the strong binding and broad neutralizing ability of the antibody. We provide a structural basis for the differential effects of certain mutations in the spike protein on 80R versus ACE2 binding, including escape mutants, which should facilitate the design of immunotherapeutics to treat a future SARS outbreak. We further show that the RBD of S1 forms dimers via an extensive interface that is disrupted in receptor- and antibody-bound crystal structures, and we propose a role for the dimer in virus stability and infectivity.
-
===Crystal structure of SARS spike protein receptor binding domain===
+
Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R.,Hwang WC, Lin Y, Santelli E, Sui J, Jaroszewski L, Stec B, Farzan M, Marasco WA, Liddington RC J Biol Chem. 2006 Nov 10;281(45):34610-6. Epub 2006 Sep 5. PMID:16954221<ref>PMID:16954221</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2ghv" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_16954221}}, adds the Publication Abstract to the page
+
*[[Sandbox 3001|Sandbox 3001]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16954221 is the PubMed ID number.
+
*[[Spike protein 3D structures|Spike protein 3D structures]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_16954221}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2GHV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Human_sars_coronavirus Human sars coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GHV OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Severe acute respiratory syndrome-related coronavirus]]
-
==Reference==
+
[[Category: Farzan M]]
-
Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R., Hwang WC, Lin Y, Santelli E, Sui J, Jaroszewski L, Stec B, Farzan M, Marasco WA, Liddington RC, J Biol Chem. 2006 Nov 10;281(45):34610-6. Epub 2006 Sep 5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16954221 16954221]
+
[[Category: Hwang WC]]
-
[[Category: Human sars coronavirus]]
+
[[Category: Jaroszewski L]]
-
[[Category: Single protein]]
+
[[Category: Liddington RC]]
-
[[Category: Farzan, M.]]
+
[[Category: Lin Y]]
-
[[Category: Hwang, W C.]]
+
[[Category: Marasco WA]]
-
[[Category: Jaroszewski, L.]]
+
[[Category: Santelli E]]
-
[[Category: Liddington, R C.]]
+
[[Category: Stec B]]
-
[[Category: Lin, Y.]]
+
[[Category: Sui J]]
-
[[Category: Marasco, W A.]]
+
-
[[Category: Santelli, E.]]
+
-
[[Category: Stec, B.]]
+
-
[[Category: Sui, J.]]
+
-
[[Category: S protein]]
+
-
[[Category: Sar]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 21:56:55 2008''
+

Current revision

Crystal structure of SARS spike protein receptor binding domain

PDB ID 2ghv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools