This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2axv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2axv.png|left|200px]]
 
-
<!--
+
==Structure of PrgX Y153C mutant==
-
The line below this paragraph, containing "STRUCTURE_2axv", creates the "Structure Box" on the page.
+
<StructureSection load='2axv' size='340' side='right'caption='[[2axv]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2axv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AXV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2axv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2axv OCA], [https://pdbe.org/2axv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2axv RCSB], [https://www.ebi.ac.uk/pdbsum/2axv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2axv ProSAT]</span></td></tr>
-
{{STRUCTURE_2axv| PDB=2axv | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Structure of PrgX Y153C mutant===
+
[https://www.uniprot.org/uniprot/Q04114_ENTFL Q04114_ENTFL]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16339309}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16339309 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ax/2axv_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_16339309}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2axv ConSurf].
-
2AXV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AXV OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis., Shi K, Brown CK, Gu ZY, Kozlowicz BK, Dunny GM, Ohlendorf DH, Earhart CA, Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18596-601. Epub 2005 Dec 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16339309 16339309]
+
[[Category: Enterococcus faecalis]]
[[Category: Enterococcus faecalis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Brown, C K.]]
+
[[Category: Brown CK]]
-
[[Category: Dunny, G M.]]
+
[[Category: Dunny GM]]
-
[[Category: Earhart, C A.]]
+
[[Category: Earhart CA]]
-
[[Category: Gu, Z Y.]]
+
[[Category: Gu ZY]]
-
[[Category: Kozlowicz, B K.]]
+
[[Category: Kozlowicz BK]]
-
[[Category: Ohlendorf, D H.]]
+
[[Category: Ohlendorf DH]]
-
[[Category: Shi, K.]]
+
[[Category: Shi K]]
-
[[Category: Dna binding]]
+
-
[[Category: Domain]]
+
-
[[Category: Pheromone]]
+
-
[[Category: Repressor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:36:26 2008''
+

Current revision

Structure of PrgX Y153C mutant

PDB ID 2axv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2axv"
Personal tools