1s9a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1s9a.png|left|200px]]
 
-
<!--
+
==Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP==
-
The line below this paragraph, containing "STRUCTURE_1s9a", creates the "Structure Box" on the page.
+
<StructureSection load='1s9a' size='340' side='right'caption='[[1s9a]], [[Resolution|resolution]] 2.47&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1s9a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S9A FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.47&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HGP:(1-HEXADECANOYL-2-TETRADECANOYL-GLYCEROL-3-YL)+PHOSPHONYL+CHOLINE'>HGP</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
-
{{STRUCTURE_1s9a| PDB=1s9a | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s9a OCA], [https://pdbe.org/1s9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s9a RCSB], [https://www.ebi.ac.uk/pdbsum/1s9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s9a ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CLCA_RHOOP CLCA_RHOOP]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s9/1s9a_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s9a ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP===
+
==See Also==
-
 
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15060064}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15060064 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15060064}}
+
-
 
+
-
==About this Structure==
+
-
1S9A is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S9A OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP., Ferraroni M, Solyanikova IP, Kolomytseva MP, Scozzafava A, Golovleva L, Briganti F, J Biol Chem. 2004 Jun 25;279(26):27646-55. Epub 2004 Apr 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15060064 15060064]
+
-
[[Category: Catechol 1,2-dioxygenase]]
+
[[Category: Rhodococcus opacus]]
[[Category: Rhodococcus opacus]]
-
[[Category: Single protein]]
+
[[Category: Briganti F]]
-
[[Category: Briganti, F.]]
+
[[Category: Ferraroni M]]
-
[[Category: Ferraroni, M.]]
+
[[Category: Golovleva LA]]
-
[[Category: Golovleva, L A.]]
+
[[Category: Kolomytseva MP]]
-
[[Category: Kolomytseva, M P.]]
+
[[Category: Scozzafava A]]
-
[[Category: Scozzafava, A.]]
+
[[Category: Solyanikova IP]]
-
[[Category: Solyanikova, I P.]]
+
-
[[Category: Beta barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:46:18 2008''
+

Current revision

Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP

PDB ID 1s9a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools