This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1r0v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:19, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1r0v.png|left|200px]]
 
-
<!--
+
==Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21212 space group==
-
The line below this paragraph, containing "STRUCTURE_1r0v", creates the "Structure Box" on the page.
+
<StructureSection load='1r0v' size='340' side='right'caption='[[1r0v]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1r0v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R0V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0v OCA], [https://pdbe.org/1r0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r0v RCSB], [https://www.ebi.ac.uk/pdbsum/1r0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0v ProSAT]</span></td></tr>
-
{{STRUCTURE_1r0v| PDB=1r0v | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ENDA_ARCFU ENDA_ARCFU] Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/1r0v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r0v ConSurf].
 +
<div style="clear:both"></div>
-
===Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21212 space group===
+
==See Also==
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14993668}}, adds the Publication Abstract to the page
+
[[Category: Archaeoglobus fulgidus DSM 4304]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14993668 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Li H]]
-
{{ABSTRACT_PUBMED_14993668}}
+
[[Category: Zhang Y]]
-
 
+
-
==About this Structure==
+
-
1R0V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0V OCA].
+
-
 
+
-
==Reference==
+
-
Structure determination of a truncated dimeric splicing endonuclease in pseudo-face-centered space group P2(1)2(1)2., Zhang Y, Li H, Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):447-52. Epub 2004, Feb 25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14993668 14993668]
+
-
[[Category: Archaeoglobus fulgidus]]
+
-
[[Category: Single protein]]
+
-
[[Category: TRNA-intron endonuclease]]
+
-
[[Category: Li, H.]]
+
-
[[Category: Zhang, Y.]]
+
-
[[Category: Endonuclease]]
+
-
[[Category: Rna splicing]]
+
-
[[Category: X-ray crystallography]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:52:06 2008''
+

Current revision

Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21212 space group

PDB ID 1r0v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1r0v"
Personal tools