This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1x3e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:36, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1x3e.png|left|200px]]
 
-
<!--
+
==Crystal structure of the single-stranded DNA-binding protein from Mycobacterium smegmatis==
-
The line below this paragraph, containing "STRUCTURE_1x3e", creates the "Structure Box" on the page.
+
<StructureSection load='1x3e' size='340' side='right'caption='[[1x3e]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1x3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis Mycolicibacterium smegmatis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X3E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-
{{STRUCTURE_1x3e| PDB=1x3e | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x3e OCA], [https://pdbe.org/1x3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x3e RCSB], [https://www.ebi.ac.uk/pdbsum/1x3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x3e ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SSB_MYCS2 SSB_MYCS2]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x3/1x3e_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x3e ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of the single-stranded DNA-binding protein from Mycobacterium smegmatis===
+
==See Also==
-
 
+
*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16041080}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16041080 is the PubMed ID number.
+
[[Category: Mycolicibacterium smegmatis]]
-
-->
+
[[Category: Dauter Z]]
-
{{ABSTRACT_PUBMED_16041080}}
+
[[Category: Jeyakanthan J]]
-
 
+
[[Category: Manjunath GP]]
-
==About this Structure==
+
[[Category: Muniyappa K]]
-
1X3E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_smegmatis Mycobacterium smegmatis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X3E OCA].
+
[[Category: Saikrishnan K]]
-
 
+
[[Category: Sekar K]]
-
==Reference==
+
[[Category: Singh P]]
-
Structure of Mycobacterium smegmatis single-stranded DNA-binding protein and a comparative study involving homologus SSBs: biological implications of structural plasticity and variability in quaternary association., Saikrishnan K, Manjunath GP, Singh P, Jeyakanthan J, Dauter Z, Sekar K, Muniyappa K, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1140-8. Epub 2005, Jul 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16041080 16041080]
+
[[Category: Vijayan M]]
-
 
+
-
Structure of Mycobacterium tuberculosis single-stranded DNA-binding protein. Variability in quaternary structure and its implications., Saikrishnan K, Jeyakanthan J, Venkatesh J, Acharya N, Sekar K, Varshney U, Vijayan M, J Mol Biol. 2003 Aug 8;331(2):385-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12888346 12888346]
+
-
 
+
-
Crystallization and preliminary X-ray studies of the single-stranded DNA-binding protein from Mycobacterium tuberculosis., Saikrishnan K, Jeyakanthan J, Venkatesh J, Acharya N, Purnapatre K, Sekar K, Varshney U, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2002 Feb;58(Pt 2):327-9. Epub 2002, Jan 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11807266 11807266]
+
-
[[Category: Mycobacterium smegmatis]]
+
-
[[Category: Single protein]]
+
-
[[Category: Dauter, Z.]]
+
-
[[Category: Jeyakanthan, J.]]
+
-
[[Category: Manjunath, G P.]]
+
-
[[Category: Muniyappa, K.]]
+
-
[[Category: Saikrishnan, K.]]
+
-
[[Category: Sekar, K.]]
+
-
[[Category: Singh, P.]]
+
-
[[Category: Vijayan, M.]]
+
-
[[Category: Dna-binding protein]]
+
-
[[Category: Oligonucleotide binding fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 23:22:16 2008''
+

Current revision

Crystal structure of the single-stranded DNA-binding protein from Mycobacterium smegmatis

PDB ID 1x3e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1x3e"
Personal tools