1kvs

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(New page: 200px<br /><applet load="1kvs" size="450" color="white" frame="true" align="right" spinBox="true" caption="1kvs, resolution 2.15&Aring;" /> '''UDP-GALACTOSE 4-EPIM...)
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[[Image:1kvs.gif|left|200px]]<br /><applet load="1kvs" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1kvs, resolution 2.15&Aring;" />
 
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'''UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL'''<br />
 
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==Overview==
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==UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL==
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UDP-galactose 4-epimerase plays a critical role in sugar metabolism by, catalyzing the interconversion of UDP-galactose and UDP-glucose., Originally, it was assumed that the enzyme contained a "traditional", catalytic base that served to abstract a proton from the 4'-hydroxyl group, of the UDP-glucose or UDP-galactose substrates during the course of the, reaction. However, recent high-resolution X-ray crystallographic analyses, of the protein from Escherichia coli have demonstrated the lack of an, aspartate, a glutamate, or a histidine residue properly oriented within, the active site cleft for serving such a functional role. Rather, the, X-ray crystallographic investigation of the epimerase.NADH.UDP-glucose, abortive complex from this laboratory has shown that both Ser 124 and Tyr, 149 are located within hydrogen bonding distance to the 4'- and, 3'-hydroxyl groups of the sugar, respectively. To test the structural role, of Ser 124 in the reaction mechanism of epimerase, three site-directed, mutant proteins, namely S124A, S124T, and S124V, were constructed and, crystals of the S124A.NADH.UDP, S124A.NADH.UDP-glucose, S124T., NADH.UDP-glucose, and S124V.NADH.UDP-glucose complexes were grown. All of, the crystals employed in this investigation belonged to the space group, P3221 with the following unit cell dimensions: a = b = 83.8 A, c = 108.4, A, and one subunit per asymmetric unit. X-ray data sets were collected to, at least 2.15 A resolution, and each protein model was subsequently, refined to an R value of lower than 19.0% for all measured X-ray data. The, investigations described here demonstrate that the decreases in enzymatic, activities observed for these mutant proteins are due to the loss of a, properly positioned hydroxyl group at position 124 and not to major, tertiary and quaternary structural perturbations. In addition, these, structures demonstrate the importance of a hydroxyl group at position 124, in stabilizing the anti conformation of the nicotinamide ring as observed, in the previous structural analysis of the epimerase.NADH. UDP complex.
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<StructureSection load='1kvs' size='340' side='right'caption='[[1kvs]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1kvs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KVS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KVS FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kvs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kvs OCA], [https://pdbe.org/1kvs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kvs RCSB], [https://www.ebi.ac.uk/pdbsum/1kvs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kvs ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GALE_ECOLI GALE_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kv/1kvs_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kvs ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1KVS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with NA, NAD, UPG and PEG as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/UDP-glucose_4-epimerase UDP-glucose 4-epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.2 5.1.3.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1KVS OCA].
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*[[UDP-galactose 4-epimerase|UDP-galactose 4-epimerase]]
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__TOC__
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==Reference==
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</StructureSection>
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Molecular structures of the S124A, S124T, and S124V site-directed mutants of UDP-galactose 4-epimerase from Escherichia coli., Thoden JB, Gulick AM, Holden HM, Biochemistry. 1997 Sep 2;36(35):10685-95. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9271499 9271499]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: UDP-glucose 4-epimerase]]
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[[Category: Gulick AM]]
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[[Category: Gulick, A.]]
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[[Category: Holden HM]]
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[[Category: Holden, H.M.]]
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[[Category: Thoden JB]]
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[[Category: Thoden, J.B.]]
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[[Category: NA]]
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[[Category: NAD]]
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[[Category: PEG]]
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[[Category: UPG]]
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[[Category: epimerase]]
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[[Category: galactose metabolism]]
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[[Category: isomerase]]
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[[Category: udp-galactose]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:56:19 2007''
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Current revision

UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL

PDB ID 1kvs

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