This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wy6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:25, 2 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1wy6.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Hypothetical Protein [ST1625p] from Hyperthermophilic Archaeon Sulfolobus tokodaii==
-
The line below this paragraph, containing "STRUCTURE_1wy6", creates the "Structure Box" on the page.
+
<StructureSection load='1wy6' size='340' side='right'caption='[[1wy6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wy6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vdu 1vdu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WY6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wy6 OCA], [https://pdbe.org/1wy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wy6 RCSB], [https://www.ebi.ac.uk/pdbsum/1wy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wy6 ProSAT]</span></td></tr>
-
{{STRUCTURE_1wy6| PDB=1wy6 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q970G9_SULTO Q970G9_SULTO]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of ST1625p, a protein encoded by a hypothetical open reading frame ST1625 in the genome of the hyperthermophilic archaeon Sulfolobus tokodaii, was determined at 2.2 A resolution. The only sequence similarity exhibited by the amino-acid sequence of ST1625p was a 33% identity with the sequence of SSO0983p from S. solfataricus. The 19 kDa monomeric protein was observed to consist of a right-handed superhelix assembled from a tandem repeat of ten alpha-helices. A structural homology search using the DALI and MATRAS algorithms indicates that this protein can be classified as a helical repeat protein.
-
===Crystal Structure of Hypothetical Protein [ST1625p] from Hyperthermophilic Archaeon Sulfolobus tokodaii===
+
The first crystal structure of an archaeal helical repeat protein.,Yoneda K, Sakuraba H, Tsuge H, Katunuma N, Kuramitsu S, Kawabata T, Ohshima T Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt, 7):636-9. Epub 2005 Jun 30. PMID:16511116<ref>PMID:16511116</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16511116}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1wy6" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16511116 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_16511116}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
1WY6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vdu 1vdu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WY6 OCA].
+
[[Category: Sulfurisphaera tokodaii]]
-
 
+
[[Category: Katunuma N]]
-
==Reference==
+
[[Category: Kawabata T]]
-
The first crystal structure of an archaeal helical repeat protein., Yoneda K, Sakuraba H, Tsuge H, Katunuma N, Kuramitsu S, Kawabata T, Ohshima T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt, 7):636-9. Epub 2005 Jun 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16511116 16511116]
+
[[Category: Kuramitsu S]]
-
[[Category: Single protein]]
+
[[Category: Ohshima T]]
-
[[Category: Sulfolobus tokodaii]]
+
[[Category: Sakuraba H]]
-
[[Category: Katunuma, N.]]
+
[[Category: Tsuge H]]
-
[[Category: Kawabata, T.]]
+
[[Category: Yoneda K]]
-
[[Category: Kuramitsu, S.]]
+
-
[[Category: Ohshima, T.]]
+
-
[[Category: Sakuraba, H.]]
+
-
[[Category: Tsuge, H.]]
+
-
[[Category: Yoneda, K.]]
+
-
[[Category: Helical repeat protein]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:04:06 2008''
+

Current revision

Crystal Structure of Hypothetical Protein [ST1625p] from Hyperthermophilic Archaeon Sulfolobus tokodaii

PDB ID 1wy6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools