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3sli

From Proteopedia

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(New page: 200px<br /><applet load="3sli" size="450" color="white" frame="true" align="right" spinBox="true" caption="3sli, resolution 1.8&Aring;" /> '''LEECH INTRAMOLECULAR ...)
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[[Image:3sli.gif|left|200px]]<br /><applet load="3sli" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="3sli, resolution 1.8&Aring;" />
 
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'''LEECH INTRAMOLECULAR TRANS-SIALIDASE COMPLEXED WITH 2,7-ANHYDRO-NEU5AC PREPARED BY SOAKING WITH 3'-SIALYLLACTOSE'''<br />
 
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==Overview==
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==LEECH INTRAMOLECULAR TRANS-SIALIDASE COMPLEXED WITH 2,7-ANHYDRO-NEU5AC PREPARED BY SOAKING WITH 3'-SIALYLLACTOSE==
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Intramolecular trans-sialidase from leech (Macrobdella decora) is the, first member of the sialidase superfamily found to exhibit strict, specificity towards the cleavage of terminal Neu5Acalpha2--&gt;3Gal linkage, in sialoglycoconjugates. Its release of 2,7-anhydro-Neu5Ac instead of, Neu5Ac indicates that it catalyzes an intramolecular trans-sialosyl, reaction. Crystal structures of its complexes with an inactive substrate, analogue 2-propenyl-Neu5Ac, and with the product 2,7-anhydro-Neu5Ac, have, been determined to 1.8 A resolution. The boat conformation of the pyranose, observed in the complexes supports the proposed enzymatic mechanism that, O7 of an axial 6-glycerol group attacks the positively charged C2 of the, intermediate. A generalized mechanism is proposed for the sialidase, superfamily.
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<StructureSection load='3sli' size='340' side='right'caption='[[3sli]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3sli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Macrobdella_decora Macrobdella decora]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SLI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC+ACID'>SKD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sli OCA], [https://pdbe.org/3sli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sli RCSB], [https://www.ebi.ac.uk/pdbsum/3sli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sli ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NANL_MACDE NANL_MACDE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sl/3sli_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3sli ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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3SLI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Macrobdella_decora Macrobdella decora] with SKD as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Exo-alpha-sialidase Exo-alpha-sialidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.18 3.2.1.18] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=3SLI OCA].
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*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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The 1.8 A structures of leech intramolecular trans-sialidase complexes: evidence of its enzymatic mechanism., Luo Y, Li SC, Li YT, Luo M, J Mol Biol. 1999 Jan 8;285(1):323-32. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9878409 9878409]
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[[Category: Large Structures]]
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[[Category: Exo-alpha-sialidase]]
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[[Category: Macrobdella decora]]
[[Category: Macrobdella decora]]
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[[Category: Single protein]]
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[[Category: Li SC]]
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[[Category: Li, S.C.]]
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[[Category: Li YT]]
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[[Category: Li, Y.T.]]
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[[Category: Luo M]]
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[[Category: Luo, M.]]
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[[Category: Luo Y]]
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[[Category: Luo, Y.]]
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[[Category: SKD]]
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[[Category: hydrolase]]
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[[Category: intramolecular trans-sialidase]]
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[[Category: neuraminidase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:58:50 2007''
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Current revision

LEECH INTRAMOLECULAR TRANS-SIALIDASE COMPLEXED WITH 2,7-ANHYDRO-NEU5AC PREPARED BY SOAKING WITH 3'-SIALYLLACTOSE

PDB ID 3sli

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