3thi

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(New page: 200px<br /><applet load="3thi" size="450" color="white" frame="true" align="right" spinBox="true" caption="3thi, resolution 2.0&Aring;" /> '''THIAMINASE I FROM BAC...)
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[[Image:3thi.jpg|left|200px]]<br /><applet load="3thi" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="3thi, resolution 2.0&Aring;" />
 
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'''THIAMINASE I FROM BACILLUS THIAMINOLYTICUS'''<br />
 
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==Overview==
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==THIAMINASE I FROM BACILLUS THIAMINOLYTICUS==
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Thiaminase-I catalyzes the replacement of the thiazole moiety of thiamin, with a wide variety of nucleophiles, such as pyridine, aniline, catechols, quinoline, and cysteine. The crystal structure of the enzyme from Bacillus, thiaminolyticus was determined at 2.5 A resolution by multiple isomorphous, replacement and refined to an R factor of 0.195 (Rfree = 0.272). Two other, structures, one native and one containing a covalently bound inhibitor, were determined at 2.0 A resolution by molecular replacement from a second, crystal form and were refined to R factors of 0.205 and 0.217 (Rfree =, 0.255 and 0.263), respectively. The overall structure contains two, alpha/beta-type domains separated by a large cleft. At the base of the, cleft lies Cys113, previously identified as a key active site nucleophile., The structure with a covalently bound thiamin analogue, which functions as, a mechanism-based inactivating agent, confirms the location of the active, site. Glu241 appears to function as an active site base to increase the, nucleophilicity of Cys113. The mutant Glu241Gln was made and shows no, activity. Thiaminase-I shows no sequence identity to other proteins in the, sequence databases, but the three-dimensional structure shows very high, structural homology to the periplasmic binding proteins and the, transferrins.
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<StructureSection load='3thi' size='340' side='right'caption='[[3thi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3thi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3THI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3THI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3thi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3thi OCA], [https://pdbe.org/3thi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3thi RCSB], [https://www.ebi.ac.uk/pdbsum/3thi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3thi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/THI1_PANTH THI1_PANTH] Degrades thiamine by replacing its thiazole moiety with a wide range of nucleophiles.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/th/3thi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3thi ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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3THI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Thiamine_pyridinylase Thiamine pyridinylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.2 2.5.1.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=3THI OCA].
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*[[Thiaminase|Thiaminase]]
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__TOC__
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==Reference==
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</StructureSection>
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Crystal structure of thiaminase-I from Bacillus thiaminolyticus at 2.0 A resolution., Campobasso N, Costello CA, Kinsland C, Begley TP, Ealick SE, Biochemistry. 1998 Nov 10;37(45):15981-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9843405 9843405]
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Thiamine pyridinylase]]
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[[Category: Begley TP]]
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[[Category: Begley, T.P.]]
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[[Category: Campobasso N]]
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[[Category: Campobasso, N.]]
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[[Category: Ealick SE]]
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[[Category: Ealick, S.E.]]
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[[Category: SO4]]
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[[Category: thiamin degradation]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:59:36 2007''
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Current revision

THIAMINASE I FROM BACILLUS THIAMINOLYTICUS

PDB ID 3thi

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