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2okx

From Proteopedia

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{{Seed}}
 
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[[Image:2okx.png|left|200px]]
 
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<!--
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==Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A==
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The line below this paragraph, containing "STRUCTURE_2okx", creates the "Structure Box" on the page.
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<StructureSection load='2okx' size='340' side='right'caption='[[2okx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2okx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._GL1 Bacillus sp. GL1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OKX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_2okx| PDB=2okx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2okx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2okx OCA], [https://pdbe.org/2okx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2okx RCSB], [https://www.ebi.ac.uk/pdbsum/2okx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2okx ProSAT]</span></td></tr>
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</table>
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===Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A===
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== Function ==
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[https://www.uniprot.org/uniprot/Q93RE7_BACGL Q93RE7_BACGL]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_17936784}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 17936784 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2okx_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_17936784}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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2OKX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKX OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2okx ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1., Cui Z, Maruyama Y, Mikami B, Hashimoto W, Murata K, J Mol Biol. 2007 Nov 23;374(2):384-98. Epub 2007 Sep 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17936784 17936784]
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</StructureSection>
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[[Category: Alpha-L-rhamnosidase]]
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[[Category: Bacillus sp. GL1]]
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[[Category: Bacillus sp.]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Cui Z]]
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[[Category: Cui, Z.]]
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[[Category: Hashimoto W]]
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[[Category: Hashimoto, W.]]
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[[Category: Mikami B]]
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[[Category: Mikami, B.]]
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[[Category: Murata K]]
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[[Category: Murata, K.]]
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[[Category: Alpha barrel]]
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[[Category: Glycoside hydrolase family 78]]
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[[Category: Invertase]]
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[[Category: Rhamnosidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 02:09:49 2008''
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Current revision

Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A

PDB ID 2okx

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