2vok

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{{Seed}}
 
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[[Image:2vok.png|left|200px]]
 
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==Murine TRIM21==
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The line below this paragraph, containing "STRUCTURE_2vok", creates the "Structure Box" on the page.
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<StructureSection load='2vok' size='340' side='right'caption='[[2vok]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vok]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VOK FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vok OCA], [https://pdbe.org/2vok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vok RCSB], [https://www.ebi.ac.uk/pdbsum/2vok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vok ProSAT]</span></td></tr>
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{{STRUCTURE_2vok| PDB=2vok | SCENE= }}
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</table>
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== Function ==
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===MURINE TRIM21===
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[https://www.uniprot.org/uniprot/RO52_MOUSE RO52_MOUSE] E3 ubiquitin-protein ligase whose activity is dependent on E2 enzymes, UBE2D1, UBE2D2, UBE2E1 and UBE2E2. Forms a ubiquitin ligase complex in cooperation with the E2 UBE2D2 that is used not only for the ubiquitination of USP4 and IKBKB but also for its self-ubiquitination. Component of cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes such as SCF(SKP2)-like complexes. A TRIM21-containing SCF(SKP2)-like complex is shown to mediate ubiquitination of CDKN1B ('Thr-187' phosphorylated-form), thereby promoting its degradation by the proteasome. Monoubiquitinates IKBKB that will negatively regulates Tax-induced NF-kappa-B signaling. Negatively regulates IFN-beta production post-pathogen recognition by polyubiquitin-mediated degradation of IRF3. Mediates the ubiquitin-mediated proteasomal degradation of IgG1 heavy chain, which is linked to the VCP-mediated ER-associated degradation (ERAD) pathway. Promotes IRF8 ubiquitination, which enhanced the ability of IRF8 to stimulate cytokine genes transcription in macrophages. Plays a role in the regulation of the cell cycle progression. Enhances the decapping activity of DCP2. Exists as a ribonucleoprotein particle present in all mammalian cells studied and composed of a single polypeptide and one of four small RNA molecules. At least two isoforms are present in nucleated and red blood cells, and tissue specific differences in RO/SSA proteins have been identified. The common feature of these proteins is their ability to bind HY RNAs.2.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_18420815}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 18420815 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vo/2vok_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_18420815}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vok ConSurf].
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2VOK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VOK OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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TRIM21 is an IgG receptor that is structurally, thermodynamically, and kinetically conserved., Keeble AH, Khan Z, Forster A, James LC, Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6045-50. Epub 2008 Apr 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18420815 18420815]
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Single protein]]
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[[Category: Forster A]]
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[[Category: Forster, A.]]
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[[Category: James LC]]
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[[Category: James, L C.]]
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[[Category: Keeble AH]]
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[[Category: Keeble, A H.]]
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[[Category: Khan Z]]
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[[Category: Khan, Z.]]
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[[Category: B30 2]]
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[[Category: Coiled coil]]
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[[Category: Cytoplasm]]
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[[Category: Dna-binding]]
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[[Category: Immune system]]
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[[Category: Metal-binding]]
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[[Category: Nucleus]]
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[[Category: Polymorphism]]
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[[Category: Pryspry]]
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[[Category: Ribonucleoprotein]]
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[[Category: Rna-binding]]
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[[Category: Ro 52]]
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[[Category: Spry systemic lupus erythematosus]]
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[[Category: Systemic lupus erythematosus]]
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[[Category: Zinc]]
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[[Category: Zinc-finger]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 02:51:24 2008''
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Current revision

Murine TRIM21

PDB ID 2vok

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