2d57

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:11, 8 November 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2d57.png|left|200px]]
 
-
<!--
+
==Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography==
-
The line below this paragraph, containing "STRUCTURE_2d57", creates the "Structure Box" on the page.
+
<StructureSection load='2d57' size='340' side='right'caption='[[2d57]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d57]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D57 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d57 OCA], [https://pdbe.org/2d57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d57 RCSB], [https://www.ebi.ac.uk/pdbsum/2d57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d57 ProSAT]</span></td></tr>
-
{{STRUCTURE_2d57| PDB=2d57 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AQP4_RAT AQP4_RAT] Forms a water-specific channel. Osmoreceptor which regulates body water balance and mediates water flow within the central nervous system. It is expressed predominantly in the ependymal cell lining the aqueductal system and over the space of the brain in contact with the subarachnoid space, as cerebrospinal fluid fills these structures it may facilitate water balance between brain parenchyma and the fluid compartment. In the plasma membranes of the neurons of the paraventricular and supraoptic nuclei, it may mediate rapid changes in cell volume in response to local shifts in extracellular osmolarity.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d57_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d57 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Aquaporin-4 (AQP4) is the predominant water channel in the mammalian brain and an important drug target for treatment of cerebral edema, bipolar disorder and mesial temporal lobe epilepsy. We determined the AQP4 structure by electron crystallography of double-layered, two-dimensional (2D) crystals. The structure allows us to discuss how the expression ratio between the long and short AQP4 splicing variant can determine the size of in vivo orthogonal arrays. Furthermore, AQP4 contains a short 3(10) helix in an extracellular loop, which mediates weak but specific interactions between AQP4 molecules in adjoining membranes. This finding suggests a previously unexpected role for AQP4 in cell adhesion. This notion was corroborated by expression of AQP4 in L-cells, which resulted in clustering of the cells. Our AQP4 structure thus enables us to propose models for the size regulation of orthogonal arrays and channel-mediated cell adhesion.
-
===Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography===
+
Implications of the aquaporin-4 structure on array formation and cell adhesion.,Hiroaki Y, Tani K, Kamegawa A, Gyobu N, Nishikawa K, Suzuki H, Walz T, Sasaki S, Mitsuoka K, Kimura K, Mizoguchi A, Fujiyoshi Y J Mol Biol. 2006 Jan 27;355(4):628-39. Epub 2005 Nov 17. PMID:16325200<ref>PMID:16325200</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2d57" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_16325200}}, adds the Publication Abstract to the page
+
*[[Aquaporin 3D structures|Aquaporin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16325200 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_16325200}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2D57 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D57 OCA].
+
-
 
+
-
==Reference==
+
-
Implications of the aquaporin-4 structure on array formation and cell adhesion., Hiroaki Y, Tani K, Kamegawa A, Gyobu N, Nishikawa K, Suzuki H, Walz T, Sasaki S, Mitsuoka K, Kimura K, Mizoguchi A, Fujiyoshi Y, J Mol Biol. 2006 Jan 27;355(4):628-39. Epub 2005 Nov 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16325200 16325200]
+
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
-
[[Category: Single protein]]
+
[[Category: Fujiyoshi Y]]
-
[[Category: Fujiyoshi, Y.]]
+
[[Category: Gyobu N]]
-
[[Category: Gyobu, N.]]
+
[[Category: Hiroaki Y]]
-
[[Category: Hiroaki, Y.]]
+
[[Category: Kamegawa A]]
-
[[Category: Kamegawa, A.]]
+
[[Category: Kimura K]]
-
[[Category: Kimura, K.]]
+
[[Category: Mitsuoka K]]
-
[[Category: Mitsuoka, K.]]
+
[[Category: Mizoguchi A]]
-
[[Category: Mizoguchi, A.]]
+
[[Category: Nishikawa K]]
-
[[Category: Nishikawa, K.]]
+
[[Category: Sasaki S]]
-
[[Category: Sasaki, S.]]
+
[[Category: Suzuki H]]
-
[[Category: Suzuki, H.]]
+
[[Category: Tani K]]
-
[[Category: Tani, K.]]
+
[[Category: Walz T]]
-
[[Category: Walz, T.]]
+
-
[[Category: Aquaporin]]
+
-
[[Category: Baculovirus expression system]]
+
-
[[Category: Electron diffraction]]
+
-
[[Category: Electron microscopy]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Two-dimensional crystal]]
+
-
[[Category: Water channel]]
+
-
[[Category: Water transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 03:13:53 2008''
+

Current revision

Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography

PDB ID 2d57

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d57"
Personal tools