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1lic

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X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.

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Retrieved from "http://52.214.119.220/wiki/index.php/1lic"

Categories: Large Structures | Mus musculus | Banaszak LJ | Bernlohr DA | Lalonde JM

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-[[Image:1lic.gif|left|200px]]<br /><applet load="1lic" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1lic, resolution 1.6&Aring;" />
-'''X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.'''<br />
-==Overview==
+==X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.==
-Adipocyte lipid-binding protein is a 14.6-kDa polypeptide that is, responsible for the intracellular trafficking of fatty acids. Its, structure previously has been solved in the apo and holo forms complexed, with stearate and oleate. To examine the binding of lipids other than, those with a carboxylate headgroup, we have determined the structure of, ALBP in complex with a sulfonic acid, hexadecanesulfonic acid, and, compared its structure with the natural fatty acid analog, palmitate., Crystallographic refinement led to similar models, both with R-factors of, about 20% and a resolution of 1.6 A. results can be compared with earlier, studies on C18 fatty acids, both saturated and unsaturated. The previously, refined complexes with stearate and oleate in combination with the, complexes of palmitate and hexadecanesulfonic acid demonstrate specific, positions for water molecules bound in the internal cavity. Many of the, water-binding sites are present in both the apo form and the holo forms of, the protein. With ligand present, a network of 10 internalized water, molecules appear to form a hydrophobic hydration region. In spite of the, sp3 geometry of the sulfonic acid derivative, the headgroup occupies the, same site as that of the planar carboxylate in natural fatty acids. These, results demonstrate that intracellular lipid-binding proteins are capable, of binding a wider variety of lipids than previously considered and reveal, the importance of interior ordered water molecules in the binding cavity.
+<StructureSection load='1lic' size='340' side='right'caption='[[1lic]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1lic]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LIC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LIC FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HDS:1-HEXADECANOSULFONIC+ACID'>HDS</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>, <scene name='pdbligand=PPI:PROPANOIC+ACID'>PPI</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lic OCA], [https://pdbe.org/1lic PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lic RCSB], [https://www.ebi.ac.uk/pdbsum/1lic PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lic ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FABP4_MOUSE FABP4_MOUSE] Lipid transport protein in adipocytes. Binds both long chain fatty acids and retinoic acid. Delivers long-chain fatty acids and retinoic acid to their cognate receptors in the nucleus.<ref>PMID:12077340</ref> <ref>PMID:16574478</ref> <ref>PMID:17516629</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/li/1lic_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lic ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-LIC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with CYO, HDS and PPI as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1LIC OCA].
+*[[Fatty acid-binding protein 3D structures|Fatty acid-binding protein 3D structures]]
+== References ==
-==Reference==
+<references/>
-X-ray crystallographic structures of adipocyte lipid-binding protein complexed with palmitate and hexadecanesulfonic acid. Properties of cavity binding sites., LaLonde JM, Bernlohr DA, Banaszak LJ, Biochemistry. 1994 Apr 26;33(16):4885-95. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8161548 8161548]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Single protein]]
+[[Category: Banaszak LJ]]
-[[Category: Banaszak, L.J.]]
+[[Category: Bernlohr DA]]
-[[Category: Bernlohr, D.A.]]
+[[Category: Lalonde JM]]
-[[Category: Lalonde, J.M.]]
-[[Category: CYO]]
-[[Category: HDS]]
-[[Category: PPI]]
-[[Category: lipid-binding protein]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 20:34:46 2007''

1lic

From Proteopedia

Current revision

X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.

Structural highlights

Function

Evolutionary Conservation

See Also

References

Contents

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