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1t6c

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{{Seed}}
 
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[[Image:1t6c.png|left|200px]]
 
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==Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member==
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The line below this paragraph, containing "STRUCTURE_1t6c", creates the "Structure Box" on the page.
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<StructureSection load='1t6c' size='340' side='right'caption='[[1t6c]], [[Resolution|resolution]] 1.53&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1t6c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T6C FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.53&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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{{STRUCTURE_1t6c| PDB=1t6c | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6c OCA], [https://pdbe.org/1t6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t6c RCSB], [https://www.ebi.ac.uk/pdbsum/1t6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6c ProSAT]</span></td></tr>
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</table>
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===Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member===
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== Function ==
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[https://www.uniprot.org/uniprot/O67040_AQUAE O67040_AQUAE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15248747 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t6/1t6c_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15248747}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1T6C is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus_vf5 Aquifex aeolicus vf5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6C OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t6c ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structural characterization of the stringent response related exopolyphosphatase/guanosine pentaphosphate phosphohydrolase protein family., Kristensen O, Laurberg M, Liljas A, Kastrup JS, Gajhede M, Biochemistry. 2004 Jul 20;43(28):8894-900. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15248747 15248747]
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</StructureSection>
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[[Category: Aquifex aeolicus VF5]]
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Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli., Kuroda A, Nomura K, Ohtomo R, Kato J, Ikeda T, Takiguchi N, Ohtake H, Kornberg A, Science. 2001 Jul 27;293(5530):705-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11474114 11474114]
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[[Category: Large Structures]]
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[[Category: Gajhede M]]
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Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase., Keasling JD, Bertsch L, Kornberg A, Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7029-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8394006 8394006]
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[[Category: Kastrup JS]]
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[[Category: Kristensen O]]
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Exopolyphosphate phosphatase and guanosine pentaphosphate phosphatase belong to the sugar kinase/actin/hsp 70 superfamily., Reizer J, Reizer A, Saier MH Jr, Bork P, Sander C, Trends Biochem Sci. 1993 Jul;18(7):247-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8212131 8212131]
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[[Category: Laurberg M]]
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[[Category: Aquifex aeolicus vf5]]
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[[Category: Liljas A]]
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[[Category: Single protein]]
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[[Category: Gajhede, M.]]
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[[Category: Kastrup, J S.]]
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[[Category: Kristensen, O.]]
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[[Category: Laurberg, M.]]
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[[Category: Liljas, A.]]
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[[Category: Actin-like fold]]
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[[Category: Alpha/beta protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 05:36:30 2008''
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Current revision

Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member

PDB ID 1t6c

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