1yht

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{{Seed}}
 
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[[Image:1yht.png|left|200px]]
 
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==Crystal structure analysis of Dispersin B==
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The line below this paragraph, containing "STRUCTURE_1yht", creates the "Structure Box" on the page.
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<StructureSection load='1yht' size='340' side='right'caption='[[1yht]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yht]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aggregatibacter_actinomycetemcomitans Aggregatibacter actinomycetemcomitans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YHT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YHT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_1yht| PDB=1yht | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yht OCA], [https://pdbe.org/1yht PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yht RCSB], [https://www.ebi.ac.uk/pdbsum/1yht PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yht ProSAT]</span></td></tr>
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</table>
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===Crystal structure analysis of Dispersin B===
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== Function ==
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[https://www.uniprot.org/uniprot/Q840G9_AGGAC Q840G9_AGGAC]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_15878175}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15878175 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yh/1yht_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15878175}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1YHT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aggregatibacter_actinomycetemcomitans Aggregatibacter actinomycetemcomitans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YHT OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yht ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structural analysis of dispersin B, a biofilm-releasing glycoside hydrolase from the periodontopathogen Actinobacillus actinomycetemcomitans., Ramasubbu N, Thomas LM, Ragunath C, Kaplan JB, J Mol Biol. 2005 Jun 10;349(3):475-86. Epub 2005 Apr 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15878175 15878175]
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</StructureSection>
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Detachment of Actinobacillus actinomycetemcomitans biofilm cells by an endogenous beta-hexosaminidase activity., Kaplan JB, Ragunath C, Ramasubbu N, Fine DH, J Bacteriol. 2003 Aug;185(16):4693-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12896987 12896987]
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Enzymatic detachment of Staphylococcus epidermidis biofilms., Kaplan JB, Ragunath C, Velliyagounder K, Fine DH, Ramasubbu N, Antimicrob Agents Chemother. 2004 Jul;48(7):2633-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15215120 15215120]
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Genes involved in the synthesis and degradation of matrix polysaccharide in Actinobacillus actinomycetemcomitans and Actinobacillus pleuropneumoniae biofilms., Kaplan JB, Velliyagounder K, Ragunath C, Rohde H, Mack D, Knobloch JK, Ramasubbu N, J Bacteriol. 2004 Dec;186(24):8213-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15576769 15576769]
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[[Category: Aggregatibacter actinomycetemcomitans]]
[[Category: Aggregatibacter actinomycetemcomitans]]
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[[Category: Beta-N-acetylhexosaminidase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Kaplan JB]]
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[[Category: Kaplan, J B.]]
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[[Category: Ragunath C]]
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[[Category: Ragunath, C.]]
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[[Category: Ramasubbu N]]
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[[Category: Ramasubbu, N.]]
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[[Category: Thomas LM]]
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[[Category: Thomas, L M.]]
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[[Category: Beta barrel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 06:04:57 2008''
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Current revision

Crystal structure analysis of Dispersin B

PDB ID 1yht

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