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1vtm

From Proteopedia

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{{Seed}}
 
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[[Image:1vtm.png|left|200px]]
 
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==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==
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The line below this paragraph, containing "STRUCTURE_1vtm", creates the "Structure Box" on the page.
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<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [https://pdbe.org/1vtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [https://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>
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{{STRUCTURE_1vtm| PDB=1vtm | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vt/1vtm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vtm ConSurf].
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<div style="clear:both"></div>
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===STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION===
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==See Also==
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*[[Tobacco Mosaic Virus|Tobacco Mosaic Virus]]
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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<!--
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__TOC__
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The line below this paragraph, {{ABSTRACT_PUBMED_1453461}}, adds the Publication Abstract to the page
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 1453461 is the PubMed ID number.
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[[Category: Large Structures]]
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-->
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[[Category: Tobacco mild green mosaic virus]]
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{{ABSTRACT_PUBMED_1453461}}
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[[Category: Pattanayek R]]
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[[Category: Stubbs G]]
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==About this Structure==
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1VTM is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA].
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==Reference==
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Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction., Pattanayek R, Stubbs G, J Mol Biol. 1992 Nov 20;228(2):516-28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1453461 1453461]
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[[Category: Single protein]]
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[[Category: Pattanayek, R.]]
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[[Category: Stubbs, G.]]
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[[Category: Icosahedral virus]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 06:33:54 2008''
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Current revision

STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION

PDB ID 1vtm

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