This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nkg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:50, 10 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nkg.png|left|200px]]
 
-
<!--
+
==Rhamnogalacturonan lyase from Aspergillus aculeatus==
-
The line below this paragraph, containing "STRUCTURE_1nkg", creates the "Structure Box" on the page.
+
<StructureSection load='1nkg' size='340' side='right'caption='[[1nkg]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nkg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NKG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1nkg| PDB=1nkg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkg OCA], [https://pdbe.org/1nkg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nkg RCSB], [https://www.ebi.ac.uk/pdbsum/1nkg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkg ProSAT]</span></td></tr>
-
 
+
</table>
-
===Rhamnogalacturonan lyase from Aspergillus aculeatus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/RGLA_ASPAC RGLA_ASPAC] Pectinolytic enzyme that has a positive effect in the apple hot-mash liquefaction process. This endolyase hydrolyzes the alpha-L-rhamnopyranosyl-(1,4)-alpha-D-galacturonopyranosyl glycosidic linkage by beta-elimination, thereby generating oligosaccharides terminating at the non-reducing end with a hex-4-enopyranosyluronic acid residue.<ref>PMID:20851126</ref> <ref>PMID:8587995</ref> <ref>PMID:9576783</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15135077}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15135077 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkg_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15135077}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1NKG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKG OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nkg ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4., McDonough MA, Kadirvelraj R, Harris P, Poulsen JC, Larsen S, FEBS Lett. 2004 May 7;565(1-3):188-94. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15135077 15135077]
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Aspergillus aculeatus]]
[[Category: Aspergillus aculeatus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Harris, P.]]
+
[[Category: Harris P]]
-
[[Category: Kadirvelraj, R.]]
+
[[Category: Kadirvelraj R]]
-
[[Category: Larsen, S.]]
+
[[Category: Larsen S]]
-
[[Category: McDonough, M A.]]
+
[[Category: McDonough MA]]
-
[[Category: Poulsen, J C.]]
+
[[Category: Poulsen JC]]
-
[[Category: Carbohydrate active enzyme]]
+
-
[[Category: Pectin]]
+
-
[[Category: Polysaccharide lyase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 06:41:23 2008''
+

Current revision

Rhamnogalacturonan lyase from Aspergillus aculeatus

PDB ID 1nkg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1nkg"
Personal tools