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2qsy

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{{Seed}}
 
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[[Image:2qsy.png|left|200px]]
 
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<!--
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==Human nicotinamide riboside kinase 1 in complex with ADP==
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The line below this paragraph, containing "STRUCTURE_2qsy", creates the "Structure Box" on the page.
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<StructureSection load='2qsy' size='340' side='right'caption='[[2qsy]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2qsy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QSY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2qsy| PDB=2qsy | SCENE= }}
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qsz|2qsz]], [[2qt0|2qt0]], [[2qt1|2qt1]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NRK1, C9orf95 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsy OCA], [https://pdbe.org/2qsy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qsy RCSB], [https://www.ebi.ac.uk/pdbsum/2qsy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qsy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/NRK1_HUMAN NRK1_HUMAN]] Catalyzes the phosphorylation of nicotinamide riboside (NR) and nicotinic acid riboside (NaR) to form nicotinamide mononucleotide (NMN) and nicotinic acid mononucleotide (NaMN). The enzyme also phosphorylates the antitumor drugs tiazofurin and 3-deazaguanosine.<ref>PMID:15137942</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qsy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The eukaryotic nicotinamide riboside kinase (Nrk) pathway, which is induced in response to nerve damage and promotes replicative life span in yeast, converts nicotinamide riboside to nicotinamide adenine dinucleotide (NAD+) by phosphorylation and adenylylation. Crystal structures of human Nrk1 bound to nucleoside and nucleotide substrates and products revealed an enzyme structurally similar to Rossmann fold metabolite kinases and allowed the identification of active site residues, which were shown to be essential for human Nrk1 and Nrk2 activity in vivo. Although the structures account for the 500-fold discrimination between nicotinamide riboside and pyrimidine nucleosides, no enzyme feature was identified to recognize the distinctive carboxamide group of nicotinamide riboside. Indeed, nicotinic acid riboside is a specific substrate of human Nrk enzymes and is utilized in yeast in a novel biosynthetic pathway that depends on Nrk and NAD+ synthetase. Additionally, nicotinic acid riboside is utilized in vivo by Urh1, Pnp1, and Preiss-Handler salvage. Thus, crystal structures of Nrk1 led to the identification of new pathways to NAD+.
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===Human nicotinamide riboside kinase 1 in complex with ADP===
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Nicotinamide riboside kinase structures reveal new pathways to NAD+.,Tempel W, Rabeh WM, Bogan KL, Belenky P, Wojcik M, Seidle HF, Nedyalkova L, Yang T, Sauve AA, Park HW, Brenner C PLoS Biol. 2007 Oct 2;5(10):e263. PMID:17914902<ref>PMID:17914902</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17914902}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2qsy" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17914902 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17914902}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Human]]
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2QSY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSY OCA].
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[[Category: Large Structures]]
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[[Category: Arrowsmith, C H]]
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==Reference==
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[[Category: Bochkarev, A]]
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Nicotinamide riboside kinase structures reveal new pathways to NAD+., Tempel W, Rabeh WM, Bogan KL, Belenky P, Wojcik M, Seidle HF, Nedyalkova L, Yang T, Sauve AA, Park HW, Brenner C, PLoS Biol. 2007 Oct 2;5(10):e263. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17914902 17914902]
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[[Category: Brenner, C]]
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[[Category: Homo sapiens]]
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[[Category: Edwards, A M]]
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[[Category: Single protein]]
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[[Category: Landry, R]]
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[[Category: Arrowsmith, C H.]]
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[[Category: Nedyalkova, L]]
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[[Category: Bochkarev, A.]]
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[[Category: Park, H]]
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[[Category: Brenner, C.]]
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[[Category: Rabeh, W M]]
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[[Category: Edwards, A M.]]
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[[Category: Structural genomic]]
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[[Category: Landry, R.]]
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[[Category: Sundstrom, M]]
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[[Category: Nedyalkova, L.]]
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[[Category: Tempel, W]]
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[[Category: Park, H.]]
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[[Category: Weigelt, J]]
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[[Category: Rabeh, W M.]]
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[[Category: SGC, Structural Genomics Consortium.]]
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[[Category: Sundstrom, M.]]
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[[Category: Tempel, W.]]
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[[Category: Weigelt, J.]]
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[[Category: Adp]]
[[Category: Adp]]
[[Category: Alternative splicing]]
[[Category: Alternative splicing]]
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[[Category: Pyridine nucleotide biosynthesis]]
[[Category: Pyridine nucleotide biosynthesis]]
[[Category: Sgc]]
[[Category: Sgc]]
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[[Category: Structural genomic]]
 
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[[Category: Structural genomics consortium]]
 
[[Category: Transferase]]
[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 07:42:49 2008''
 

Current revision

Human nicotinamide riboside kinase 1 in complex with ADP

PDB ID 2qsy

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