1nyq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:00, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nyq.png|left|200px]]
 
-
<!--
+
==Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate==
-
The line below this paragraph, containing "STRUCTURE_1nyq", creates the "Structure Box" on the page.
+
<StructureSection load='1nyq' size='340' side='right'caption='[[1nyq]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nyq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NYQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TSB:5-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE'>TSB</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1nyq| PDB=1nyq | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nyq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nyq OCA], [https://pdbe.org/1nyq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nyq RCSB], [https://www.ebi.ac.uk/pdbsum/1nyq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nyq ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYT_STAAW SYT_STAAW]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/1nyq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nyq ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12875846}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12875846 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12875846}}
+
-
 
+
-
==About this Structure==
+
-
1NYQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYQ OCA].
+
-
 
+
-
==Reference==
+
-
Conformational movements and cooperativity upon amino acid, ATP and tRNA binding in threonyl-tRNA synthetase., Torres-Larios A, Sankaranarayanan R, Rees B, Dock-Bregeon AC, Moras D, J Mol Biol. 2003 Aug 1;331(1):201-11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12875846 12875846]
+
-
[[Category: Single protein]]
+
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Threonine--tRNA ligase]]
+
[[Category: Dock-Bregeon AC]]
-
[[Category: Dock-Bregeon, A C.]]
+
[[Category: Moras D]]
-
[[Category: Moras, D.]]
+
[[Category: Rees B]]
-
[[Category: Rees, B.]]
+
[[Category: Sankaranarayanan R]]
-
[[Category: Sankaranarayanan, R.]]
+
[[Category: Torres-Larios A]]
-
[[Category: Torres-Larios, A.]]
+
-
[[Category: Adenylate]]
+
-
[[Category: Threonyl-trna synthetase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 07:59:25 2008''
+

Current revision

Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate

PDB ID 1nyq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools