1lzn

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(New page: 200px<br /><applet load="1lzn" size="450" color="white" frame="true" align="right" spinBox="true" caption="1lzn, resolution 1.7&Aring;" /> '''NEUTRON STRUCTURE OF ...)
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[[Image:1lzn.gif|left|200px]]<br /><applet load="1lzn" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1lzn, resolution 1.7&Aring;" />
 
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'''NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME'''<br />
 
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==Overview==
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==NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME==
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Triclinic crystals of lysozyme, hydrogen-deuterium exchanged in deuterated, solvent, have been studied using neutron quasi-Laue techniques and a newly, developed cylinder image-plate detector. The wavelength range employed was, from 2.7 to 3.5 A, which gave 9426 significant reflections [F &gt;/=, 2sigma(F)] to a resolution limit of 1. 7 A. The deuteration states of the, H atoms in the protein molecule were identified, followed by an extensive, analysis of the water structure surrounding the protein. The final R, factor was 20.4% (Rfree = 22.1%). In total, the 244 observed water, molecules form approximately one layer of water around the protein with, far fewer water molecules located further away. Water molecules covering, the apolar patches make tangential layers at 4-5 A from the surface or, form C-H...O contacts, and several water-molecule sites can be identified, in the apolar cavities. Many of the water molecules are apparently, orientationally disordered, and only 115 out of the 244 water molecules, sit in mean single orientations. Comparison of these results with, quasi-elastic neutron scattering observations of the water dynamics leads, to a picture of the water molecules forming an extended constantly, fluctuating network covering the protein surface.
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<StructureSection load='1lzn' size='340' side='right'caption='[[1lzn]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1lzn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LZN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LZN FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lzn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lzn OCA], [https://pdbe.org/1lzn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lzn RCSB], [https://www.ebi.ac.uk/pdbsum/1lzn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lzn ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lz/1lzn_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lzn ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Triclinic crystals of lysozyme, hydrogen-deuterium exchanged in deuterated solvent, have been studied using neutron quasi-Laue techniques and a newly developed cylinder image-plate detector. The wavelength range employed was from 2.7 to 3.5 A, which gave 9426 significant reflections [F &gt;/= 2sigma(F)] to a resolution limit of 1. 7 A. The deuteration states of the H atoms in the protein molecule were identified, followed by an extensive analysis of the water structure surrounding the protein. The final R factor was 20.4% (Rfree = 22.1%). In total, the 244 observed water molecules form approximately one layer of water around the protein with far fewer water molecules located further away. Water molecules covering the apolar patches make tangential layers at 4-5 A from the surface or form C-H...O contacts, and several water-molecule sites can be identified in the apolar cavities. Many of the water molecules are apparently orientationally disordered, and only 115 out of the 244 water molecules sit in mean single orientations. Comparison of these results with quasi-elastic neutron scattering observations of the water dynamics leads to a picture of the water molecules forming an extended constantly fluctuating network covering the protein surface.
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==About this Structure==
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Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme.,Bon C, Lehmann MS, Wilkinson C Acta Crystallogr D Biol Crystallogr. 1999 May;55(Pt 5):978-87. PMID:10216294<ref>PMID:10216294</ref>
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1LZN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] with NO3, NA and DOD as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1LZN OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme., Bon C, Lehmann MS, Wilkinson C, Acta Crystallogr D Biol Crystallogr. 1999 May;55(Pt 5):978-87. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10216294 10216294]
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</div>
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[[Category: Gallus gallus]]
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<div class="pdbe-citations 1lzn" style="background-color:#fffaf0;"></div>
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[[Category: Lysozyme]]
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[[Category: Single protein]]
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[[Category: Bon, C.I.]]
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[[Category: Lehmann, M.S.]]
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[[Category: Wilkinson, C.]]
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[[Category: DOD]]
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[[Category: NA]]
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[[Category: NO3]]
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[[Category: hydrolase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:00:50 2007''
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==See Also==
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*[[Lysozyme 3D structures|Lysozyme 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Gallus gallus]]
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[[Category: Large Structures]]
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[[Category: Bon CI]]
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[[Category: Lehmann MS]]
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[[Category: Wilkinson C]]

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NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME

PDB ID 1lzn

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