3b43

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{{Seed}}
 
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[[Image:3b43.png|left|200px]]
 
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==I-band fragment I65-I70 from titin==
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The line below this paragraph, containing "STRUCTURE_3b43", creates the "Structure Box" on the page.
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<StructureSection load='3b43' size='340' side='right'caption='[[3b43]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3b43]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. The May 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Titin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_5 10.2210/rcsb_pdb/mom_2015_5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B43 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B43 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b43 OCA], [https://pdbe.org/3b43 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b43 RCSB], [https://www.ebi.ac.uk/pdbsum/3b43 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b43 ProSAT]</span></td></tr>
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{{STRUCTURE_3b43| PDB=3b43 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D0VWS0_RABIT D0VWS0_RABIT]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b43_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b43 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Myofibril elasticity, critical to muscle function, is dictated by the intrasarcomeric filament titin, which acts as a molecular spring. To date, the molecular events underlying the mechanics of the folded titin chain remain largely unknown. We have elucidated the crystal structure of the 6-Ig fragment I65-I70 from the elastic I-band fraction of titin and validated its conformation in solution using small angle x-ray scattering. The long-range properties of the chain have been visualized by electron microscopy on a 19-Ig fragment and modeled for the full skeletal tandem. Results show that conserved Ig-Ig transition motifs generate high-order in the structure of the filament, where conformationally stiff segments interspersed with pliant hinges form a regular pattern of dynamic super-motifs leading to segmental flexibility in the chain. Pliant hinges support molecular shape rearrangements that dominate chain behavior at moderate stretch, whereas stiffer segments predictably oppose high stretch forces upon full chain extension. There, librational entropy can be expected to act as an energy barrier to prevent Ig unfolding while, instead, triggering the unraveling of flanking springs formed by proline, glutamate, valine, and lysine (PEVK) sequences. We propose a mechanistic model based on freely jointed rigid segments that rationalizes the response to stretch of titin Ig-tandems according to molecular features.
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===I-band fragment I65-I70 from titin===
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A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain.,von Castelmur E, Marino M, Svergun DI, Kreplak L, Ucurum-Fotiadis Z, Konarev PV, Urzhumtsev A, Labeit D, Labeit S, Mayans O Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1186-91. Epub 2008 Jan 22. PMID:18212128<ref>PMID:18212128</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3b43" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18212128}}, adds the Publication Abstract to the page
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*[[Titin 3D structures|Titin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18212128 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18212128}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B43 OCA].
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[[Category: Oryctolagus cuniculus]]
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[[Category: RCSB PDB Molecule of the Month]]
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==Reference==
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A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain., von Castelmur E, Marino M, Svergun DI, Kreplak L, Ucurum-Fotiadis Z, Konarev PV, Urzhumtsev A, Labeit D, Labeit S, Mayans O, Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1186-91. Epub 2008 Jan 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18212128 18212128]
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Poly-Ig tandems from I-band titin share extended domain arrangements irrespective of the distinct features of their modular constituents., Marino M, Svergun DI, Kreplak L, Konarev PV, Maco B, Labeit D, Mayans O, J Muscle Res Cell Motil. 2005;26(6-8):355-65. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16341830 16341830]
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[[Category: Non-specific serine/threonine protein kinase]]
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[[Category: Castelmur, E von.]]
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[[Category: Labeit, D.]]
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[[Category: Labeit, S.]]
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[[Category: Marino, M.]]
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[[Category: Mayans, O.]]
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[[Category: Elastic filament]]
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[[Category: Extended poly-ig filament]]
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[[Category: I-set ig fold]]
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[[Category: Structural protein]]
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[[Category: Titin]]
[[Category: Titin]]
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[[Category: Labeit D]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 08:26:29 2008''
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[[Category: Labeit S]]
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[[Category: Marino M]]
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[[Category: Mayans O]]
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[[Category: Von Castelmur E]]

Current revision

I-band fragment I65-I70 from titin

PDB ID 3b43

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