2pzk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:13, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pzk.png|left|200px]]
 
-
<!--
+
==Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD==
-
The line below this paragraph, containing "STRUCTURE_2pzk", creates the "Structure Box" on the page.
+
<StructureSection load='2pzk' size='340' side='right'caption='[[2pzk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pzk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_bronchiseptica Bordetella bronchiseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PZK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PZK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
{{STRUCTURE_2pzk| PDB=2pzk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pzk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pzk OCA], [https://pdbe.org/2pzk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pzk RCSB], [https://www.ebi.ac.uk/pdbsum/2pzk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pzk ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/O87988_BORBO O87988_BORBO]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17950751}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17950751 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pz/2pzk_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17950751}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2PZK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_bronchiseptica Bordetella bronchiseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PZK OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pzk ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Predicting protein function from structure--the roles of short-chain dehydrogenase/reductase enzymes in Bordetella O-antigen biosynthesis., King JD, Harmer NJ, Preston A, Palmer CM, Rejzek M, Field RA, Blundell TL, Maskell DJ, J Mol Biol. 2007 Nov 30;374(3):749-63. Epub 2007 Sep 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17950751 17950751]
+
</StructureSection>
-
 
+
-
Cloning, expression, purification and preliminary crystallographic analysis of the short-chain dehydrogenase enzymes WbmF, WbmG and WbmH from Bordetella bronchiseptica., Harmer NJ, King JD, Palmer CM, Preston A, Maskell DJ, Blundell TL, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Aug 1;63(Pt, 8):711-5. Epub 2007 Jul 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17671375 17671375]
+
[[Category: Bordetella bronchiseptica]]
[[Category: Bordetella bronchiseptica]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Blundell, T L.]]
+
[[Category: Blundell TL]]
-
[[Category: Harmer, N J.]]
+
[[Category: Harmer NJ]]
-
[[Category: King, J D.]]
+
[[Category: King JD]]
-
[[Category: Maskell, D J.]]
+
[[Category: Maskell DJ]]
-
[[Category: Protein-nad complex]]
+
-
[[Category: Rossman fold]]
+
-
[[Category: Sugar binding protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 08:47:38 2008''
+

Current revision

Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD

PDB ID 2pzk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pzk"
Personal tools