We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
1m3i
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1m3i" size="450" color="white" frame="true" align="right" spinBox="true" caption="1m3i, resolution 2.9Å" /> '''Perfringolysin O, new...) |
|||
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1m3i.gif|left|200px]]<br /><applet load="1m3i" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1m3i, resolution 2.9Å" /> | ||
| - | '''Perfringolysin O, new crystal form'''<br /> | ||
| - | == | + | ==Perfringolysin O, new crystal form== |
| - | + | <StructureSection load='1m3i' size='340' side='right'caption='[[1m3i]], [[Resolution|resolution]] 2.90Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1m3i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M3I FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m3i OCA], [https://pdbe.org/1m3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m3i RCSB], [https://www.ebi.ac.uk/pdbsum/1m3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m3i ProSAT]</span></td></tr> | |
| - | [ | + | </table> |
| - | [[ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/TACY_CLOPE TACY_CLOPE] Sulfhydryl-activated toxin that causes cytolysis by forming pores in cholesterol containing host membranes. After binding to target membranes, the protein assembles into a pre-pore complex. A conformation change leads to insertion in the host membrane and formation of an oligomeric pore complex. Cholesterol may be required for binding to host cell membranes, membrane insertion and pore formation. Can be reversibly inactivated by oxidation.<ref>PMID:17328912</ref> |
| - | [[ | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m3/1m3i_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m3i ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Cytolysin 3D structures|Cytolysin 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Clostridium perfringens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Feil S]] | ||
| + | [[Category: Parker M]] | ||
| + | [[Category: Polekhina G]] | ||
| + | [[Category: Rossjohn J]] | ||
| + | [[Category: Tweten R]] | ||
Current revision
Perfringolysin O, new crystal form
| |||||||||||
