2p6j

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{{Seed}}
 
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[[Image:2p6j.png|left|200px]]
 
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==Full-sequence computational design and solution structure of a thermostable protein variant==
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The line below this paragraph, containing "STRUCTURE_2p6j", creates the "Structure Box" on the page.
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<StructureSection load='2p6j' size='340' side='right'caption='[[2p6j]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2p6j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6j OCA], [https://pdbe.org/2p6j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6j RCSB], [https://www.ebi.ac.uk/pdbsum/2p6j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6j ProSAT]</span></td></tr>
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{{STRUCTURE_2p6j| PDB=2p6j | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Computational protein design procedures were applied to the redesign of the entire sequence of a 51 amino acid residue protein, Drosophila melanogaster engrailed homeodomain. Various sequence optimization algorithms were compared and two resulting designed sequences were experimentally evaluated. The two sequences differ by 11 mutations and share 22% and 24% sequence identity with the wild-type protein. Both computationally designed proteins were considerably more stable than the naturally occurring protein, with midpoints of thermal denaturation greater than 99 degrees C. The solution structure was determined for one of the two sequences using multidimensional heteronuclear NMR spectroscopy, and the structure was found to closely match the original design template scaffold.
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===Full-sequence computational design and solution structure of a thermostable protein variant===
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Full-sequence computational design and solution structure of a thermostable protein variant.,Shah PS, Hom GK, Ross SA, Lassila JK, Crowhurst KA, Mayo SL J Mol Biol. 2007 Sep 7;372(1):1-6. Epub 2007 Jun 16. PMID:17628593<ref>PMID:17628593</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 2p6j" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17628593 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17628593}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6J OCA].
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[[Category: Unidentified]]
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[[Category: Crowhurst KA]]
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==Reference==
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[[Category: Hom GK]]
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Full-sequence computational design and solution structure of a thermostable protein variant., Shah PS, Hom GK, Ross SA, Lassila JK, Crowhurst KA, Mayo SL, J Mol Biol. 2007 Sep 7;372(1):1-6. Epub 2007 Jun 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17628593 17628593]
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[[Category: Lassila JK]]
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[[Category: Crowhurst, K A.]]
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[[Category: Mayo SL]]
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[[Category: Hom, G K.]]
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[[Category: Ross SA]]
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[[Category: Lassila, J K.]]
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[[Category: Shah PS]]
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[[Category: Mayo, S L.]]
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[[Category: Ross, S A.]]
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[[Category: Shah, P S.]]
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[[Category: Computational protein design]]
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[[Category: De novo protein]]
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[[Category: Engrailed homeodomain]]
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[[Category: Helix-turn-helix]]
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[[Category: Nmr]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 08:51:32 2008''
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Current revision

Full-sequence computational design and solution structure of a thermostable protein variant

PDB ID 2p6j

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