1ykg

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{{Seed}}
 
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[[Image:1ykg.png|left|200px]]
 
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==Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase==
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The line below this paragraph, containing "STRUCTURE_1ykg", creates the "Structure Box" on the page.
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<StructureSection load='1ykg' size='340' side='right'caption='[[1ykg]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ykg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YKG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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{{STRUCTURE_1ykg| PDB=1ykg | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ykg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ykg OCA], [https://pdbe.org/1ykg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ykg RCSB], [https://www.ebi.ac.uk/pdbsum/1ykg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ykg ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYSJ_ECOLI CYSJ_ECOLI] Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.[HAMAP-Rule:MF_01541]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yk/1ykg_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ykg ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The flavoprotein moiety of Escherichia coli sulfite reductase (SiR-FP) is homologous to electron transfer proteins such as cytochrome-P450 reductase (CPR) or nitric oxide synthase (NOS). We report on the three-dimensional structure of SiR-FP18, the flavodoxin-like domain of SiR-FP, which has been determined by NMR. In the holoenzyme, this domain plays an important role by shuttling electrons from the FAD to the hemoprotein (the beta-subunit). The structure presented here was determined using distance and torsion angle information in combination with residual dipolar couplings determined in two different alignment media. Several protein-FMN NOEs allowed us to place the prosthetic group in its binding pocket. The structure is well-resolved, and (15)N relaxation data indicate that SiR-FP18 is a compact domain. The binding interface with cytochrome c, a nonphysiological electron acceptor, has been determined using chemical shift mapping. Comparison of the SiR-FP18 structure with the corresponding domains from CPR and NOS shows that the fold of the protein core is highly conserved, but the analysis of the electrostatic surfaces reveals significant differences between the three domains. These observations are placed in the physiological context so they can contribute to the understanding of the electron transfer mechanism in the SiR holoenzyme.
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===Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase===
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Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli.,Sibille N, Blackledge M, Brutscher B, Coves J, Bersch B Biochemistry. 2005 Jun 28;44(25):9086-95. PMID:15966732<ref>PMID:15966732</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15966732}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1ykg" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15966732 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15966732}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1YKG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YKG OCA].
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==Reference==
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Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli., Sibille N, Blackledge M, Brutscher B, Coves J, Bersch B, Biochemistry. 2005 Jun 28;44(25):9086-95. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15966732 15966732]
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Reactivity, secondary structure, and molecular topology of the Escherichia coli sulfite reductase flavodoxin-like domain., Champier L, Sibille N, Bersch B, Brutscher B, Blackledge M, Coves J, Biochemistry. 2002 Mar 19;41(11):3770-80. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11888295 11888295]
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1H, 13C and 15N assignment of the flavodoxin-like domain of the Escherichia coli sulfite reductase., Sibille N, Coves J, Marion D, Brutscher B, Bersch B, J Biomol NMR. 2001 Sep;21(1):71-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11693572 11693572]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bersch, B.]]
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[[Category: Bersch B]]
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[[Category: Blackledge, M.]]
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[[Category: Blackledge M]]
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[[Category: Brutscher, B.]]
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[[Category: Brutscher B]]
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[[Category: Coves, J.]]
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[[Category: Coves J]]
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[[Category: Sibille, N.]]
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[[Category: Sibille N]]
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[[Category: Electron transport]]
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[[Category: Flavoprotein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 08:54:44 2008''
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Current revision

Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase

PDB ID 1ykg

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