2qvt

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{{Seed}}
 
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[[Image:2qvt.png|left|200px]]
 
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==Structure of Melampsora lini avirulence protein, AvrL567-D==
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The line below this paragraph, containing "STRUCTURE_2qvt", creates the "Structure Box" on the page.
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<StructureSection load='2qvt' size='340' side='right'caption='[[2qvt]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2qvt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Melampsora_lini Melampsora lini]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QVT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qvt OCA], [https://pdbe.org/2qvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qvt RCSB], [https://www.ebi.ac.uk/pdbsum/2qvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qvt ProSAT]</span></td></tr>
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{{STRUCTURE_2qvt| PDB=2qvt | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q1HBK6_MELLI Q1HBK6_MELLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qv/2qvt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qvt ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The gene-for-gene mechanism of plant disease resistance involves direct or indirect recognition of pathogen avirulence (Avr) proteins by plant resistance (R) proteins. Flax rust (Melampsora lini) AvrL567 avirulence proteins and the corresponding flax (Linum usitatissimum) L5, L6, and L7 resistance proteins interact directly. We determined the three-dimensional structures of two members of the AvrL567 family, AvrL567-A and AvrL567-D, at 1.4- and 2.3-A resolution, respectively. The structures of both proteins are very similar and reveal a beta-sandwich fold with no close known structural homologs. The polymorphic residues in the AvrL567 family map to the surface of the protein, and polymorphisms in residues associated with recognition differences for the R proteins lead to significant changes in surface chemical properties. Analysis of single amino acid substitutions in AvrL567 proteins confirm the role of individual residues in conferring differences in recognition and suggest that the specificity results from the cumulative effects of multiple amino acid contacts. The structures also provide insights into possible pathogen-associated functions of AvrL567 proteins, with nucleic acid binding activity demonstrated in vitro. Our studies provide some of the first structural information on avirulence proteins that bind directly to the corresponding resistance proteins, allowing an examination of the molecular basis of the interaction with the resistance proteins as a step toward designing new resistance specificities.
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===Structure of Melampsora lini avirulence protein, AvrL567-D===
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Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity.,Wang CI, Guncar G, Forwood JK, Teh T, Catanzariti AM, Lawrence GJ, Loughlin FE, Mackay JP, Schirra HJ, Anderson PA, Ellis JG, Dodds PN, Kobe B Plant Cell. 2007 Sep;19(9):2898-912. Epub 2007 Sep 14. PMID:17873095<ref>PMID:17873095</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17873095}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2qvt" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17873095 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17873095}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2QVT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Melampsora_lini Melampsora lini]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVT OCA].
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==Reference==
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Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity., Wang CI, Guncar G, Forwood JK, Teh T, Catanzariti AM, Lawrence GJ, Loughlin FE, Mackay JP, Schirra HJ, Anderson PA, Ellis JG, Dodds PN, Kobe B, Plant Cell. 2007 Sep;19(9):2898-912. Epub 2007 Sep 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17873095 17873095]
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[[Category: Melampsora lini]]
[[Category: Melampsora lini]]
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[[Category: Single protein]]
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[[Category: Anderson PA]]
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[[Category: Anderson, P A.]]
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[[Category: Catanzariti AM]]
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[[Category: Catanzariti, A M.]]
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[[Category: Dodds PN]]
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[[Category: Dodds, P N.]]
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[[Category: Ellis JG]]
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[[Category: Ellis, J G.]]
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[[Category: Forwood JK]]
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[[Category: Forwood, J K.]]
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[[Category: Guncar G]]
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[[Category: Guncar, G.]]
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[[Category: Kobe B]]
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[[Category: Kobe, B.]]
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[[Category: Lawrence G]]
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[[Category: Lawrence, G.]]
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[[Category: Schirra HJ]]
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[[Category: Schirra, H J.]]
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[[Category: Teh T]]
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[[Category: Teh, T.]]
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[[Category: Wang CI]]
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[[Category: Wang, C I.]]
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[[Category: Avrl567-a]]
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[[Category: Avrl567-d]]
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[[Category: Crystallization]]
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[[Category: Molecular replacement]]
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[[Category: Plant disease resistance]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 09:06:49 2008''
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Current revision

Structure of Melampsora lini avirulence protein, AvrL567-D

PDB ID 2qvt

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