This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i57

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:28, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2i57.png|left|200px]]
 
-
<!--
+
==Crystal Structure of L-Rhamnose Isomerase from Pseudomonas stutzeri in Complex with D-Allose==
-
The line below this paragraph, containing "STRUCTURE_2i57", creates the "Structure Box" on the page.
+
<StructureSection load='2i57' size='340' side='right'caption='[[2i57]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2i57]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I57 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AOS:D-ALLOSE'>AOS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2i57| PDB=2i57 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i57 OCA], [https://pdbe.org/2i57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i57 RCSB], [https://www.ebi.ac.uk/pdbsum/2i57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i57 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q75WH8_STUST Q75WH8_STUST]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i57_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i57 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of L-Rhamnose Isomerase from Pseudomonas stutzeri in Complex with D-Allose===
+
==See Also==
-
 
+
*[[L-rhamnose isomerase|L-rhamnose isomerase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17141803}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17141803 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_17141803}}
+
-
 
+
-
==About this Structure==
+
-
2I57 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I57 OCA].
+
-
 
+
-
==Reference==
+
-
The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity., Yoshida H, Yamada M, Ohyama Y, Takada G, Izumori K, Kamitori S, J Mol Biol. 2007 Feb 2;365(5):1505-16. Epub 2006 Nov 6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17141803 17141803]
+
-
[[Category: L-rhamnose isomerase]]
+
[[Category: Pseudomonas stutzeri]]
[[Category: Pseudomonas stutzeri]]
-
[[Category: Single protein]]
+
[[Category: Izumori K]]
-
[[Category: Izumori, K.]]
+
[[Category: Kamitori S]]
-
[[Category: Kamitori, S.]]
+
[[Category: Takada G]]
-
[[Category: Takada, G.]]
+
[[Category: Yamada M]]
-
[[Category: Yamada, M.]]
+
[[Category: Yoshida H]]
-
[[Category: Yoshida, H.]]
+
-
[[Category: Beta/alpha barrel]]
+
-
[[Category: Homo-tetramer]]
+
-
[[Category: Metal-binding protein]]
+
-
[[Category: Tim barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 09:50:15 2008''
+

Current revision

Crystal Structure of L-Rhamnose Isomerase from Pseudomonas stutzeri in Complex with D-Allose

PDB ID 2i57

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools