1mhm

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(New page: 200px<br /><applet load="1mhm" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mhm, resolution 2.3&Aring;" /> '''Crystal structure of ...)
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[[Image:1mhm.jpg|left|200px]]<br /><applet load="1mhm" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1mhm, resolution 2.3&Aring;" />
 
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'''Crystal structure of S-adenosylmethionine decarboxylase from potato'''<br />
 
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==Overview==
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==Crystal structure of S-adenosylmethionine decarboxylase from potato==
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S-Adenosylmethionine decarboxylase has been implicated in cell growth and, differentiation and is synthesized as a proenzyme, which undergoes, autocatalytic cleavage to generate an active site pyruvoyl group. In, mammals, S-adenosylmethionine decarboxylase is active as a dimer in which, each protomer contains one alpha subunit and one beta subunit. In many, higher organisms, autocatalysis and decarboxylation are stimulated by, putrescine, which binds in a buried site containing numerous negatively, charged residues. In contrast, plant S-adenosylmethionine decarboxylases, are fully active in the absence of putrescine, with rapid autocatalysis, that is not stimulated by putrescine. We have determined the structure of, the S-adenosylmethionine decarboxylase from potato, Solanum tuberosum, to, 2.3 A resolution. Unlike the previously determined human enzyme structure, the potato enzyme is a monomer in the crystal structure., Ultracentrifugation studies show that the potato enzyme is also a monomer, under physiological conditions, with a weak self-association constant of, 6.5 x 10(4) M(-)(1) for the monomer-dimer association. Although the potato, enzyme contains most of the buried charged residues that make up the, putrescine binding site in the human enzyme, there is no evidence for a, putrescine binding site in the potato enzyme. Instead, several amino acid, substitutions, including Leu13/Arg18, Phe111/Arg114, Asp174/Val181, and, Phe285/His294 (human/potato), provide side chains that mimic the role of, putrescine in the human enzyme. In the potato enzyme, the positively, charged residues form an extensive network of hydrogen bonds bridging a, cluster of highly conserved negatively charged residues and the active, site, including interactions with the catalytic residues Glu16 and His249., The results explain the constitutively high activity of plant, S-adenosylmethionine decarboxylases in the absence of putrescine and are, consistent with previously proposed models for how putrescine together, with the buried, negatively charged site regulates enzyme activity.
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<StructureSection load='1mhm' size='340' side='right'caption='[[1mhm]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1mhm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MHM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MHM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mhm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mhm OCA], [https://pdbe.org/1mhm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mhm RCSB], [https://www.ebi.ac.uk/pdbsum/1mhm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mhm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DCAM_SOLTU DCAM_SOLTU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mh/1mhm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mhm ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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S-Adenosylmethionine decarboxylase has been implicated in cell growth and differentiation and is synthesized as a proenzyme, which undergoes autocatalytic cleavage to generate an active site pyruvoyl group. In mammals, S-adenosylmethionine decarboxylase is active as a dimer in which each protomer contains one alpha subunit and one beta subunit. In many higher organisms, autocatalysis and decarboxylation are stimulated by putrescine, which binds in a buried site containing numerous negatively charged residues. In contrast, plant S-adenosylmethionine decarboxylases are fully active in the absence of putrescine, with rapid autocatalysis that is not stimulated by putrescine. We have determined the structure of the S-adenosylmethionine decarboxylase from potato, Solanum tuberosum, to 2.3 A resolution. Unlike the previously determined human enzyme structure, the potato enzyme is a monomer in the crystal structure. Ultracentrifugation studies show that the potato enzyme is also a monomer under physiological conditions, with a weak self-association constant of 6.5 x 10(4) M(-)(1) for the monomer-dimer association. Although the potato enzyme contains most of the buried charged residues that make up the putrescine binding site in the human enzyme, there is no evidence for a putrescine binding site in the potato enzyme. Instead, several amino acid substitutions, including Leu13/Arg18, Phe111/Arg114, Asp174/Val181, and Phe285/His294 (human/potato), provide side chains that mimic the role of putrescine in the human enzyme. In the potato enzyme, the positively charged residues form an extensive network of hydrogen bonds bridging a cluster of highly conserved negatively charged residues and the active site, including interactions with the catalytic residues Glu16 and His249. The results explain the constitutively high activity of plant S-adenosylmethionine decarboxylases in the absence of putrescine and are consistent with previously proposed models for how putrescine together with the buried, negatively charged site regulates enzyme activity.
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==About this Structure==
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Monomeric S-adenosylmethionine decarboxylase from plants provides an alternative to putrescine stimulation.,Bennett EM, Ekstrom JL, Pegg AE, Ealick SE Biochemistry. 2002 Dec 10;41(49):14509-17. PMID:12463749<ref>PMID:12463749</ref>
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1MHM is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Active as [http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MHM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Monomeric S-adenosylmethionine decarboxylase from plants provides an alternative to putrescine stimulation., Bennett EM, Ekstrom JL, Pegg AE, Ealick SE, Biochemistry. 2002 Dec 10;41(49):14509-17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12463749 12463749]
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</div>
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[[Category: Adenosylmethionine decarboxylase]]
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<div class="pdbe-citations 1mhm" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Solanum tuberosum]]
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[[Category: Bennett, E.M.]]
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[[Category: Ealick, S.E.]]
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[[Category: Ekstrom, J.L.]]
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[[Category: Pegg, A.E.]]
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[[Category: covalent pyruvoyl group]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:25:19 2007''
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==See Also==
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*[[SAM decarboxylase|SAM decarboxylase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Solanum tuberosum]]
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[[Category: Bennett EM]]
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[[Category: Ealick SE]]
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[[Category: Ekstrom JL]]
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[[Category: Pegg AE]]

Current revision

Crystal structure of S-adenosylmethionine decarboxylase from potato

PDB ID 1mhm

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