2pxs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:31, 3 April 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pxs.png|left|200px]]
 
-
<!--
+
==Crystal Structure of N66D Mutant of Green Fluorescent Protein from Zoanthus sp. at 2.2 A Resolution (Mature State)==
-
The line below this paragraph, containing "STRUCTURE_2pxs", creates the "Structure Box" on the page.
+
<StructureSection load='2pxs' size='340' side='right'caption='[[2pxs]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pxs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zoanthus_sp. Zoanthus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PXS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DYG:(3S)-3-AMINO-3-[(4Z)-1-(CARBOXYMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-IMIDAZOL-2-YL]PROPANOIC+ACID'>DYG</scene>, <scene name='pdbligand=XYG:[(4Z)-2-[(1Z)-ETHANIMIDOYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>XYG</scene></td></tr>
-
{{STRUCTURE_2pxs| PDB=2pxs | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pxs OCA], [https://pdbe.org/2pxs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pxs RCSB], [https://www.ebi.ac.uk/pdbsum/2pxs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pxs ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GFPL1_ZOASP GFPL1_ZOASP]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/px/2pxs_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pxs ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of N66D Mutant of Green Fluorescent Protein from Zoanthus sp. at 2.2 A Resolution (Mature State)===
+
==See Also==
-
 
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17881826}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17881826 is the PubMed ID number.
+
[[Category: Zoanthus sp]]
-
-->
+
[[Category: Pletnev SV]]
-
{{ABSTRACT_PUBMED_17881826}}
+
[[Category: Pletnev VZ]]
-
 
+
[[Category: Pletneva NV]]
-
==About this Structure==
+
[[Category: Tikhonova TV]]
-
2PXS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Zoanthus_sp. Zoanthus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PXS OCA].
+
-
 
+
-
==Reference==
+
-
Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus., Pletneva N, Pletnev V, Tikhonova T, Pakhomov AA, Popov V, Martynov VI, Wlodawer A, Dauter Z, Pletnev S, Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1082-93. Epub 2007, Sep 19. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17881826 17881826]
+
-
[[Category: Single protein]]
+
-
[[Category: Zoanthus sp.]]
+
-
[[Category: Pletnev, S V.]]
+
-
[[Category: Pletnev, V Z.]]
+
-
[[Category: Pletneva, N V.]]
+
-
[[Category: Tikhonova, T V.]]
+
-
[[Category: Chromophore structure]]
+
-
[[Category: Green fluorescent protein]]
+
-
[[Category: Red fluorescent protein]]
+
-
[[Category: Zoanthus family]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 13:06:16 2008''
+

Current revision

Crystal Structure of N66D Mutant of Green Fluorescent Protein from Zoanthus sp. at 2.2 A Resolution (Mature State)

PDB ID 2pxs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools