This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mt3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1mt3" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mt3, resolution 2.0&Aring;" /> '''Crystal Structure of ...)
Current revision (08:41, 10 April 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mt3.jpg|left|200px]]<br /><applet load="1mt3" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1mt3, resolution 2.0&Aring;" />
 
-
'''Crystal Structure of the Tricorn Interacting Factor Selenomethionine-F1'''<br />
 
-
==Overview==
+
==Crystal Structure of the Tricorn Interacting Factor Selenomethionine-F1==
-
F1 is a 33.5 kDa serine peptidase of the alpha/beta-hydrolase family from, the archaeon Thermoplasma acidophilum. Subsequent to proteasomal protein, degradation, tricorn generates small peptides, which are cleaved by F1 to, yield single amino acids. We have solved the crystal structure of F1 with, multiwavelength anomalous dispersion (MAD) phasing at 1.8 A resolution. In, addition to the conserved catalytic domain, the structure reveals a, chiefly alpha-helical domain capping the catalytic triad. Thus, the active, site is accessible only through a narrow opening from the protein surface., Two structures with molecules bound to the active serine, including the, inhibitor phenylalanyl chloromethylketone, elucidate the N-terminal, recognition of substrates and the catalytic activation switch mechanism of, F1. The cap domain mainly confers the specificity for hydrophobic side, chains by a novel cavity system, which, analogously to the tricorn, protease, guides substrates to the buried active site and products away, from it. Finally, the structure of F1 suggests a possible functional, complex with tricorn that allows efficient processive degradation to free, amino acids for cellular recycling.
+
<StructureSection load='1mt3' size='340' side='right'caption='[[1mt3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1mt3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MT3 FirstGlance]. <br>
-
1MT3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum] with MES as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Prolyl_aminopeptidase Prolyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.5 3.4.11.5] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MT3 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mt3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mt3 OCA], [https://pdbe.org/1mt3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mt3 RCSB], [https://www.ebi.ac.uk/pdbsum/1mt3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mt3 ProSAT]</span></td></tr>
-
Structures of the tricorn-interacting aminopeptidase F1 with different ligands explain its catalytic mechanism., Goettig P, Groll M, Kim JS, Huber R, Brandstetter H, EMBO J. 2002 Oct 15;21(20):5343-52. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12374735 12374735]
+
</table>
-
[[Category: Prolyl aminopeptidase]]
+
== Function ==
-
[[Category: Single protein]]
+
[https://www.uniprot.org/uniprot/PIP_THEAC PIP_THEAC] Cleaves H-Pro-AMC as well as a wide spectrum of amino acid substrates and several peptide substrates without a proline at the N-terminus. Proteases F1, F2 and F3 degrade oligopeptides produced by Tricorn (themselves probably produced by the proteasome) yielding free amino acids.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mt/1mt3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mt3 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermoplasma acidophilum]]
[[Category: Thermoplasma acidophilum]]
-
[[Category: Brandstetter, H.]]
+
[[Category: Brandstetter H]]
-
[[Category: Goettig, P.]]
+
[[Category: Goettig P]]
-
[[Category: Groll, M.]]
+
[[Category: Groll M]]
-
[[Category: Huber, R.]]
+
[[Category: Huber R]]
-
[[Category: Kim, J.S.]]
+
[[Category: Kim J-S]]
-
[[Category: MES]]
+
-
[[Category: alpha-beta hydrolase]]
+
-
[[Category: caged active site]]
+
-
[[Category: cap domain]]
+
-
[[Category: prolylpeptidase]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:40:46 2007''
+

Current revision

Crystal Structure of the Tricorn Interacting Factor Selenomethionine-F1

PDB ID 1mt3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mt3"
Personal tools