1mut

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(New page: 200px<br /><applet load="1mut" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mut" /> '''NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPH...)
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[[Image:1mut.jpg|left|200px]]<br /><applet load="1mut" size="450" color="white" frame="true" align="right" spinBox="true"
 
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'''NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE'''<br />
 
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==Overview==
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==NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE==
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The MutT enzyme (129 residues) catalyzes the hydrolysis of normal and, mutagenic nucleoside triphosphates, such as 8-oxo-dGTP, by substitution at, the rarely attacked beta-P, to yield NMP and pyrophosphate. Previous, heteronuclear NMR studies of MutT have shown the secondary structure to, consist of a five-stranded mixed beta-sheet connected by the loop, I-alpha-helix I--loop II motif, by two tight turns, and by loop III, and, terminated by loop IV--alpha-helix II [Abeygunawardana et al. (1993), Biochemistry 32, 13071-13080; Weber et al. (1993) Biochemistry 32, 13081-13087). Complete side-chain assignments of 1H and 13C resonances, have now been made by 3D C(CO)NH and HCCH-TOCSY experiments. A total of, 1461 interproton proximities (11 per residue), obtained by 3D 15N-resolved, NOESY-HSQC and 3D 13C-resolved NOESY-HSQC spectra, including 372, long-range NOEs, as well as 65 dihedral angle (phi) restraints and 34, backbone hydrogen bond restraints were used to determine the tertiary, structure of MutT by distance geometry, simulated annealing, and energy, minimization with the program X-PLOR. The structure is globular and, compact with the parallel portion of the beta-sheet sandwiched between the, two alpha-helices, forming an alpha+beta fold. The essential divalent, cation has previously been shown to bind near residues Gly-37, Gly-38, Lys-39, and Glu-57, and nucleotides have been shown to bind near residues, Leu-54 and Val-58 by NMR relaxation methods [Frick et al. (1995), Biochemistry 34, 5577-5586].(ABSTRACT TRUNCATED AT 250 WORDS)
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<StructureSection load='1mut' size='340' side='right'caption='[[1mut]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1mut]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MUT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mut OCA], [https://pdbe.org/1mut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mut RCSB], [https://www.ebi.ac.uk/pdbsum/1mut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mut ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MUTT_ECOLI MUTT_ECOLI] Involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with almost equal efficiency thus leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate.<ref>PMID:1309939</ref> <ref>PMID:15850400</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mu/1mut_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mut ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The MutT enzyme (129 residues) catalyzes the hydrolysis of normal and mutagenic nucleoside triphosphates, such as 8-oxo-dGTP, by substitution at the rarely attacked beta-P, to yield NMP and pyrophosphate. Previous heteronuclear NMR studies of MutT have shown the secondary structure to consist of a five-stranded mixed beta-sheet connected by the loop I-alpha-helix I--loop II motif, by two tight turns, and by loop III, and terminated by loop IV--alpha-helix II [Abeygunawardana et al. (1993) Biochemistry 32, 13071-13080; Weber et al. (1993) Biochemistry 32, 13081-13087). Complete side-chain assignments of 1H and 13C resonances have now been made by 3D C(CO)NH and HCCH-TOCSY experiments. A total of 1461 interproton proximities (11 per residue), obtained by 3D 15N-resolved NOESY-HSQC and 3D 13C-resolved NOESY-HSQC spectra, including 372 long-range NOEs, as well as 65 dihedral angle (phi) restraints and 34 backbone hydrogen bond restraints were used to determine the tertiary structure of MutT by distance geometry, simulated annealing, and energy minimization with the program X-PLOR. The structure is globular and compact with the parallel portion of the beta-sheet sandwiched between the two alpha-helices, forming an alpha+beta fold. The essential divalent cation has previously been shown to bind near residues Gly-37, Gly-38, Lys-39, and Glu-57, and nucleotides have been shown to bind near residues Leu-54 and Val-58 by NMR relaxation methods [Frick et al. (1995) Biochemistry 34, 5577-5586].(ABSTRACT TRUNCATED AT 250 WORDS)
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==About this Structure==
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Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase.,Abeygunawardana C, Weber DJ, Gittis AG, Frick DN, Lin J, Miller AF, Bessman MJ, Mildvan AS Biochemistry. 1995 Nov 21;34(46):14997-5005. PMID:7578113<ref>PMID:7578113</ref>
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1MUT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MUT OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase., Abeygunawardana C, Weber DJ, Gittis AG, Frick DN, Lin J, Miller AF, Bessman MJ, Mildvan AS, Biochemistry. 1995 Nov 21;34(46):14997-5005. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7578113 7578113]
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</div>
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[[Category: Escherichia coli]]
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<div class="pdbe-citations 1mut" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Abeygunawardana, C.]]
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[[Category: Bessman, M.J.]]
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[[Category: Frick, D.N.]]
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[[Category: Gittis, A.G.]]
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[[Category: Lin, J.]]
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[[Category: Mildvan, A.S.]]
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[[Category: Miller, A.F.]]
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[[Category: Weber, D.J.]]
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[[Category: dna repair]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:43:04 2007''
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==See Also==
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*[[7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures|7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: Abeygunawardana C]]
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[[Category: Bessman MJ]]
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[[Category: Frick DN]]
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[[Category: Gittis AG]]
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[[Category: Lin J]]
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[[Category: Mildvan AS]]
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[[Category: Miller A-F]]
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[[Category: Weber DJ]]

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NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE

PDB ID 1mut

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