1mvl

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(New page: 200px<br /><applet load="1mvl" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mvl, resolution 2.0&Aring;" /> '''PPC decarboxylase mut...)
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[[Image:1mvl.gif|left|200px]]<br /><applet load="1mvl" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1mvl, resolution 2.0&Aring;" />
 
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'''PPC decarboxylase mutant C175S'''<br />
 
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==Overview==
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==PPC decarboxylase mutant C175S==
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The Arabidopsis thaliana protein AtHAL3a decarboxylates, 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a step in, coenzyme A biosynthesis. Surprisingly, this decarboxylation reaction is, carried out as an FMN-dependent redox reaction. In the first, half-reaction, the side-chain of the cysteine residue of, 4'-phosphopantothenoylcysteine is oxidised and the thioaldehyde, intermediate decarboxylates spontaneously to the, 4'-phosphopantothenoyl-aminoethenethiol intermediate. In the second, half-reaction this compound is reduced to 4'-phosphopantetheine and the, FMNH(2) cofactor is re-oxidised. The active site mutant C175S is unable to, perform this reductive half-reaction. Here, we present the crystal, structure of the AtHAL3a mutant C175S in complex with the reaction, intermediate pantothenoyl-aminoethenethiol and FMNH(2). The geometry of, binding suggests that reduction of the C(alpha)=C(beta) double bond of the, intermediate can be performed by direct hydride-transfer from N5 of, FMNH(2) to C(beta) of the aminoethenethiol-moiety supported by a, protonation of C(alpha) by Cys175. The binding mode of the substrate is, very similar to that previously observed for a pentapeptide to the, homologous enzyme EpiD that introduces the aminoethenethiol-moiety as, final reaction product at the C terminus of peptidyl-cysteine residues., This finding further supports our view that these homologous enzymes form, a protein family of homo-oligomeric flavin-containing cysteine, decarboxylases, which we have termed HFCD family.
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<StructureSection load='1mvl' size='340' side='right'caption='[[1mvl]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1mvl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MVL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MVL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mvl OCA], [https://pdbe.org/1mvl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mvl RCSB], [https://www.ebi.ac.uk/pdbsum/1mvl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mvl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HAL3A_ARATH HAL3A_ARATH] Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.<ref>PMID:12860978</ref> <ref>PMID:16415216</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mv/1mvl_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mvl ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Arabidopsis thaliana protein AtHAL3a decarboxylates 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a step in coenzyme A biosynthesis. Surprisingly, this decarboxylation reaction is carried out as an FMN-dependent redox reaction. In the first half-reaction, the side-chain of the cysteine residue of 4'-phosphopantothenoylcysteine is oxidised and the thioaldehyde intermediate decarboxylates spontaneously to the 4'-phosphopantothenoyl-aminoethenethiol intermediate. In the second half-reaction this compound is reduced to 4'-phosphopantetheine and the FMNH(2) cofactor is re-oxidised. The active site mutant C175S is unable to perform this reductive half-reaction. Here, we present the crystal structure of the AtHAL3a mutant C175S in complex with the reaction intermediate pantothenoyl-aminoethenethiol and FMNH(2). The geometry of binding suggests that reduction of the C(alpha)=C(beta) double bond of the intermediate can be performed by direct hydride-transfer from N5 of FMNH(2) to C(beta) of the aminoethenethiol-moiety supported by a protonation of C(alpha) by Cys175. The binding mode of the substrate is very similar to that previously observed for a pentapeptide to the homologous enzyme EpiD that introduces the aminoethenethiol-moiety as final reaction product at the C terminus of peptidyl-cysteine residues. This finding further supports our view that these homologous enzymes form a protein family of homo-oligomeric flavin-containing cysteine decarboxylases, which we have termed HFCD family.
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==About this Structure==
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Crystal structure of the plant PPC decarboxylase AtHAL3a complexed with an ene-thiol reaction intermediate.,Steinbacher S, Hernandez-Acosta P, Bieseler B, Blaesse M, Huber R, Culianez-Macia FA, Kupke T J Mol Biol. 2003 Mar 14;327(1):193-202. PMID:12614618<ref>PMID:12614618</ref>
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1MVL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] with FMN as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Phosphopantothenoylcysteine_decarboxylase Phosphopantothenoylcysteine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.36 4.1.1.36] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MVL OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of the plant PPC decarboxylase AtHAL3a complexed with an ene-thiol reaction intermediate., Steinbacher S, Hernandez-Acosta P, Bieseler B, Blaesse M, Huber R, Culianez-Macia FA, Kupke T, J Mol Biol. 2003 Mar 14;327(1):193-202. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12614618 12614618]
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</div>
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<div class="pdbe-citations 1mvl" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Phosphopantothenoylcysteine decarboxylase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Bieseler B]]
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[[Category: Bieseler, B.]]
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[[Category: Blaesse M]]
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[[Category: Blaesse, M.]]
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[[Category: Culianez-Macia FA]]
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[[Category: Culianez-Macia, F.A.]]
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[[Category: Hernandez-Acosta P]]
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[[Category: Hernandez-Acosta, P.]]
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[[Category: Huber R]]
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[[Category: Huber, R.]]
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[[Category: Kupke T]]
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[[Category: Kupke, T.]]
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[[Category: Steinbacher S]]
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[[Category: Steinbacher, S.]]
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[[Category: FMN]]
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[[Category: active site mutant c175s]]
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[[Category: flavoprotein]]
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[[Category: ppc decarboxylase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:44:08 2007''
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PPC decarboxylase mutant C175S

PDB ID 1mvl

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