1s76

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:28, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1s76.png|left|200px]]
 
-
<!--
+
==T7 RNA polymerase alpha beta methylene ATP elongation complex==
-
The line below this paragraph, containing "STRUCTURE_1s76", creates the "Structure Box" on the page.
+
<StructureSection load='1s76' size='340' side='right'caption='[[1s76]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1s76]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_T7 Escherichia phage T7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S76 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1s76| PDB=1s76 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s76 OCA], [https://pdbe.org/1s76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s76 RCSB], [https://www.ebi.ac.uk/pdbsum/1s76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s76 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RPOL_BPT7 RPOL_BPT7] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Responsible for the transcription of the late genes of T7. It is rifampicin-resistant. It recognizes a specific promoter sequence, unwinds the double-stranded RNA to expose the coding strand for templating, initiates transcription preferentially with a purine.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s7/1s76_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s76 ConSurf].
 +
<div style="clear:both"></div>
-
===T7 RNA polymerase alpha beta methylene ATP elongation complex===
+
==See Also==
-
 
+
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15016374}}, adds the Publication Abstract to the page
+
[[Category: Escherichia phage T7]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15016374 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Steitz TA]]
-
{{ABSTRACT_PUBMED_15016374}}
+
[[Category: Yin YW]]
-
 
+
-
==About this Structure==
+
-
1S76 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t7 Enterobacteria phage t7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S76 OCA].
+
-
 
+
-
==Reference==
+
-
The structural mechanism of translocation and helicase activity in T7 RNA polymerase., Yin YW, Steitz TA, Cell. 2004 Feb 6;116(3):393-404. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15016374 15016374]
+
-
[[Category: DNA-directed RNA polymerase]]
+
-
[[Category: Enterobacteria phage t7]]
+
-
[[Category: Single protein]]
+
-
[[Category: Steitz, T A.]]
+
-
[[Category: Yin, Y W.]]
+
-
[[Category: T7 rna polymerase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 13:45:28 2008''
+

Current revision

T7 RNA polymerase alpha beta methylene ATP elongation complex

PDB ID 1s76

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools