This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zjw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1zjw.png|left|200px]]
 
-
<!--
+
==Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA==
-
The line below this paragraph, containing "STRUCTURE_1zjw", creates the "Structure Box" on the page.
+
<StructureSection load='1zjw' size='340' side='right'caption='[[1zjw]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1zjw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZJW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZJW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=GLN:GLUTAMINE'>GLN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1zjw| PDB=1zjw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zjw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zjw OCA], [https://pdbe.org/1zjw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zjw RCSB], [https://www.ebi.ac.uk/pdbsum/1zjw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zjw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYQ_ECOLI SYQ_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zj/1zjw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zjw ConSurf].
 +
<div style="clear:both"></div>
-
===Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_15845536}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15845536 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15845536}}
+
-
 
+
-
==About this Structure==
+
-
1ZJW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZJW OCA].
+
-
 
+
-
==Reference==
+
-
tRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class I aminoacyl-tRNA synthetase., Gruic-Sovulj I, Uter N, Bullock T, Perona JJ, J Biol Chem. 2005 Jun 24;280(25):23978-86. Epub 2005 Apr 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15845536 15845536]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Glutamine--tRNA ligase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Bullock T]]
-
[[Category: Bullock, T.]]
+
[[Category: Gruic-Sovulj I]]
-
[[Category: Gruic-Sovulj, I.]]
+
[[Category: Perona JJ]]
-
[[Category: Perona, J J.]]
+
[[Category: Uter N]]
-
[[Category: Uter, N.]]
+
-
[[Category: Protein-rna complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:09:10 2008''
+

Current revision

Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

PDB ID 1zjw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1zjw"
Personal tools