1pgl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:07, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1pgl.png|left|200px]]
 
-
<!--
+
==BEAN POD MOTTLE VIRUS (BPMV), MIDDLE COMPONENT==
-
The line below this paragraph, containing "STRUCTURE_1pgl", creates the "Structure Box" on the page.
+
<StructureSection load='1pgl' size='340' side='right'caption='[[1pgl]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1pgl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bean-pod_mottle_virus_(strain_Kentucky_G7) Bean-pod mottle virus (strain Kentucky G7)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PGL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PGL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pgl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pgl OCA], [https://pdbe.org/1pgl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pgl RCSB], [https://www.ebi.ac.uk/pdbsum/1pgl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pgl ProSAT]</span></td></tr>
-
{{STRUCTURE_1pgl| PDB=1pgl | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/POL2_BPMV POL2_BPMV] Movement protein: transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/1pgl_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pgl ConSurf].
 +
<div style="clear:both"></div>
-
===BEAN POD MOTTLE VIRUS (BPMV), MIDDLE COMPONENT===
+
==See Also==
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14517057}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14517057 is the PubMed ID number.
+
[[Category: Cavarelli J]]
-
-->
+
[[Category: Johnson JE]]
-
{{ABSTRACT_PUBMED_14517057}}
+
[[Category: Lin T]]
-
 
+
-
==About this Structure==
+
-
1PGL is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Bean_pod_mottle_virus Bean pod mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PGL OCA].
+
-
 
+
-
==Reference==
+
-
Evidence for assembly-dependent folding of protein and RNA in an icosahedral virus., Lin T, Cavarelli J, Johnson JE, Virology. 2003 Sep 15;314(1):26-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14517057 14517057]
+
-
[[Category: Bean pod mottle virus]]
+
-
[[Category: Protein complex]]
+
-
[[Category: Cavarelli, J.]]
+
-
[[Category: Johnson, J E.]]
+
-
[[Category: Lin, T.]]
+
-
[[Category: Comovirus]]
+
-
[[Category: Icosahedral virus]]
+
-
[[Category: Virus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:31:47 2008''
+

Current revision

BEAN POD MOTTLE VIRUS (BPMV), MIDDLE COMPONENT

PDB ID 1pgl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1pgl"
Personal tools