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1nyt

From Proteopedia

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{{Seed}}
 
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[[Image:1nyt.png|left|200px]]
 
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==SHIKIMATE DEHYDROGENASE AroE COMPLEXED WITH NADP+==
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The line below this paragraph, containing "STRUCTURE_1nyt", creates the "Structure Box" on the page.
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<StructureSection load='1nyt' size='340' side='right'caption='[[1nyt]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1nyt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NYT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTV:(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTV</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1nyt| PDB=1nyt | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nyt OCA], [https://pdbe.org/1nyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nyt RCSB], [https://www.ebi.ac.uk/pdbsum/1nyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nyt ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AROE_ECOLI AROE_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/1nyt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nyt ConSurf].
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<div style="clear:both"></div>
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===SHIKIMATE DEHYDROGENASE AroE COMPLEXED WITH NADP+===
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==See Also==
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*[[Shikimate dehydrogenase 3D structures|Shikimate dehydrogenase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12637497}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 12637497 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12637497}}
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==About this Structure==
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1NYT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYT OCA].
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==Reference==
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Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities., Michel G, Roszak AW, Sauve V, Maclean J, Matte A, Coggins JR, Cygler M, Lapthorn AJ, J Biol Chem. 2003 May 23;278(21):19463-72. Epub 2003 Mar 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12637497 12637497]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Shikimate dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Lapthorn AJ]]
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[[Category: Lapthorn, A J.]]
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[[Category: Roszak AW]]
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[[Category: Roszak, A W.]]
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[[Category: Alpha/beta domain]]
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[[Category: Wide cleft separation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:48:05 2008''
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Current revision

SHIKIMATE DEHYDROGENASE AroE COMPLEXED WITH NADP+

PDB ID 1nyt

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