1xxr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:37, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1xxr.png|left|200px]]
 
-
<!--
+
==Structure of a mannose-specific jacalin-related lectin from Morus Nigra in complex with mannose==
-
The line below this paragraph, containing "STRUCTURE_1xxr", creates the "Structure Box" on the page.
+
<StructureSection load='1xxr' size='340' side='right'caption='[[1xxr]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xxr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Morus_nigra Morus nigra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XXR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1xxr| PDB=1xxr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xxr OCA], [https://pdbe.org/1xxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xxr RCSB], [https://www.ebi.ac.uk/pdbsum/1xxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xxr ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of a mannose-specific jacalin-related lectin from Morus Nigra in complex with mannose===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8LGR3_MORNI Q8LGR3_MORNI]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16008570}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16008570 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xx/1xxr_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16008570}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1XXR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Morus_nigra Morus nigra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XXR OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xxr ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Structural analysis of the jacalin-related lectin MornigaM from the black mulberry (Morus nigra) in complex with mannose., Rabijns A, Barre A, Van Damme EJ, Peumans WJ, De Ranter CJ, Rouge P, FEBS J. 2005 Jul;272(14):3725-32. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16008570 16008570]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Morus nigra]]
[[Category: Morus nigra]]
-
[[Category: Single protein]]
+
[[Category: Barre A]]
-
[[Category: Barre, A.]]
+
[[Category: De Ranter CJ]]
-
[[Category: Damme, E J.M Van.]]
+
[[Category: Peumans WJ]]
-
[[Category: Peumans, W J.]]
+
[[Category: Rabijns A]]
-
[[Category: Rabijns, A.]]
+
[[Category: Rouge P]]
-
[[Category: Ranter, C J.De.]]
+
[[Category: Van Damme EJM]]
-
[[Category: Rouge, P.]]
+
-
[[Category: Tetrameric b-prism fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:07:56 2008''
+

Current revision

Structure of a mannose-specific jacalin-related lectin from Morus Nigra in complex with mannose

PDB ID 1xxr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xxr"
Personal tools